RNA id: XM_036940008.1


Basic Information

Item Value
RNA id XM_036940008.1
length 8208
RNA type mRNA
GC content 0.55
exon number 20
gene id LOC110487211
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6470473 ~ 6508696 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTTGAAAACTAGGTCAATCAAAGTGTGGCGGCTCTCCTACTTCTGGATGCGTGTGCAGCAGTCTACTGCATGGGGACTACTGTGATGGAACAGCTTCGCAGAGCAGAAAGAATGGAAATCATTTCCTGATATGCGGTTGTCTCTGTGGATCAGTATACCACTACAACCCATCATCCCCAAGCCCACTGATGCCAACGCAGCAAGTGACCGCGCATTGCTCGCAGCGGCAATAAGGACCAACACCTTAATTATCAGGCCGTGGTGACATAGACGGTCACAGCACAGCAGTCACCGTTAATTATTCGCCGCAACAATTAGGATTTAAATCGCTGTTGTTATATTTTTGGATTTATTTCACCGGCAGCTGCTGCGGTAACACCCCTCTTTGTAGATCgcgtgcactccttctcccttcctctcatcggctctccatccttccttcccGGAACGGCTGGGTGGACTGGTGGGGCTATGGAGGATGCAGGTGAGATGAGGAAGACATTCACGGTACCGGAGATTAAACCGTTGAATCAGTACGACTTCAACCGAGCCAAGGTGTGCGCCAGCGTCCGGTGGCTACTGGCGAAGTCATACGGATCCGCAGAGAATGTCCCGGTGGAGCTGCGAGAGCCTCTGTACAGAGACAAGTATGAGCAGGAGCACCTCAAGCCCTCTGTCTCCCAGCTACTCCTGTCCCCTGAGCTGTACTGTAGGACCCAGGCCCTGCTCCACGGGGTCTCCAAGCCCGCTCCTCAGGGGCCCCCAGGGGACAACTCCGCACTTCTGCAGCTCCTCACCAAGAGGGGCCTGGAGCCCAAGGACCAGGATGTGGCCATCACAGAGGAAGACCTCAGCCACACGCCCATCAAGACGAGGGCCCACCTGGTCCTGATTGACTCGCTGATGTCACTGGCTGCCATGGAGACGGTGGGCAAGGTTAAGATGACTGCAGAGGCAGAGAAAATGGGAGGCGGGGCTCCGTGGGAGAATGCCCTCCTCTTCTGGGTTAACCGGttgaATCAGAAGTTGAGAGAGAGCACTGAGGATGAGGAGGTCCCAACCTGCACAGACCCACAGCCTGTTCAACCAACATGTCCCACCCGCTGGTACTGGAAACTGGTCCCACATGCCATCGCTTTTTGTTTGAAGGAGGAGTCTGGGAATAAACCTCCAGTGaTCCGTTATAGGAAGGATAAGGTTCTGTCTAAGCAGACTCCTACTTTTCCTCTGGTGTCTGGTGTAAGGGATCTGTCTAATGGCTGTGCTATAGCTGCTGTTCTGCACTACTACTGTCCTGACCTGCTGCCACTggaggATGTGTGTCTGAAGGACACCATGTCAGTAGCAGACAGTCTGTATAACCTGCAGCTGATCAGAGAGATCAGTGAGACCAGTCTACAGAGGtgctgtcacctggagctggaggacCTGCTCTACGCCCCGCCAACACTACACGTGAACATCATGAGCTTCATAGCAGAGCTGCTGGGATGGTTCGAGGTGCATAAACCTGACTTTGTCAAGCCGTTACTACCTCTAGACCTGACAGATGCCTCAGGGTTGTTGGACTGCACCAGTCCTGTCAGTGGGAACAGCAACAGTGGCTCTCCCTCCTATATCTTCAAACAGCCCTTTGTCCCCATATCCTCTCCTGCGTCATCTGAAGGGAACATGTGGACCAAGAAACAGATCCGtcgtCCACTCTCGGCTGTGACCTTCAGTATTCCATTCGGTCTGGACAGTGACGTGGACGTTGTCATGGGCAACCCCGTGCATTCTGCCAGCACCAACAGCCTGACCGCCGGCGTGCCCGCCATGATGACTTCATCGAGCAGGATGTCATCGGGGATGACACGGGTCCCCTACAGCCCCCCCGAGGACCTCAGTCACCTGGTCAGCGCCTCTGTCCCTCAACGCTCCTCCTGGGgcccgcacacacactcacacacaccggcCCTAGGGGAGCTGCCGACAGTCGAGATCATCCACACTCCtggaggagaaagaggtggaggagggaaaagaggagagaaaggagatggaggaggaggaggaggagaaagaaggcCAGAGCCACGCTTGCGTCCAGAAGGAGCTCCTGCAGGTTTCTTCCTTCATTCTCCTGAATACGACCTGACCCAGCTCAGCAGCTCCGCCCCCTGCCGCTCCGGAATGCTCTACCGACCAATAGGAGGGGAGGGGGGCGGAGGAGAGAAGCGGAGAGTGGGAggcagggagaagggggagaaggggagatcgGATGGCTCGCGGGACGATGACTCGGTACTCCGCGACGGAAGTGTGGACTCATCGGAAGCTTCCGACGACCTTCCTAGAAACACCCCCGGCAACGTCCGCCCTGGCCATGGTCGTCACGGCAACGGCAGCATCAGCAACACCGGGGGCAGCAGCAGCCCGCAGATGACGAGCTTCGCCGAGCGGCGGGACAGAAGGAGACAGCCGGCCGCACCGGGAGAGGAGTCGGCCAGCACCCCgacccccaccacccccaccctccaTACCCCCACCCACACCACCCCCACCCTCCATACCCCCACCCACACCACCCCTAGCCCAGGAGGGAAGCACCCTGAGCCGGGTACAGAGGCCTGGGAGCTGGGGGCCCGCCTGGAGGAGAAACGCAGAGCCATCGAGGCCCAGAAGAGACGCATAGAGGCCATATTcaccagacacagacagaggctgGGCAAGACTGCCTTCCTACagctgaagagaggagagggaggagagggaggagaggagcctATATCTCTGGAGGAGCGTCTCAGCCGCATGGAGGAGCagctgaaagaggaggaggagagagaagagggagaggagaaagggaaggcAGACGAAGGGAACTCCCGCCCCCAGGCGCGATTGGAGAAgcagGTGACGTTTTCCATGGATACGAGGAAGGGGGCTGAGAAAGGGGCGGATAAATGGGAGGGGCCTGAGCCGGGGGGAGGGGCTGTTCTAGGGGAGTATAATGAGGTGGTCCTGAAGCTGAGTGAGGCTCTGAGGTCACTACAGAACGACATGCAGAAACTgacccaacaacaacaacagctaatgGGCAAGAAGACCACACCCAAACCCACACCTAAAACTACACCCAAAACCACACCTAAAACTACACCCAAAACCACACCTAAAACTACACCCAAAACTACACCTAAAAGTACACCCAGGACACCACCCAGGACCCCCACTAAGAGTCCGACTAGAACCCCGACCAAGAGCATCAGTAAGGCGTGGGTGATTCCTGCAGGCTCCAAACCCCCCACCTCCACTACCTCCCCCTCTCGCAGGGCCCTCCCCCAgctttcctccacccctcccaaaACCCCCACCTCCACTACCTCCCCCTCTCGCAGGGCCCTCCCCCAGCTCTCCTCCAACCCTCCCAAaacccccatctcctcctcctgccctgccCCACGCACAAAGatccactcctcctccccccgtAGCCCTAAGCACCACCCGCGCCCCTCCCAACCCCACCCCCGCCCTTCTGAGTTGAAGTTCCCTCCTTCCACCCGTGTCCTCACCCCCCCGCAGCATGTGGACTCCCTCCCACACCTGCGACGCGTCTCCCCCAGCCAGTGCCAGGTCCAGACCTCCTCCTCTTTCCGTATCGGGGGCCCCTGCACCCCCCAGGAACCCCCTGCCGCCATGCTGCCCCAGCCCGAGGAGAGTACCTCAGAGACGGGCTCCAGCGAGACGCAGTTCAGCCTGGAGCTGGAGGAGCAGGAGGGTTTAGGGGGAGGCCGGCCCGTGTTTCCCCAGCCCAGGAGAGGCCGTTCTGGGGGTGGCAGCAGCTCTGGAGCCCCCTCCGAGGGCTCCTTTGAGAGCGAGACCCTGTCGCTGTCGGCCGCTTACtgcggaggaggggagggagggagaggaggaggagggaatcgTTACAGCCTGATGGAGGTGTCATTGTCATCCCTGGGAGGGCCAGAGGGGGGCAGTGACGAGCCAACTGACACAGAAGGACAGGAGTTGTTCTCTGACTCCATGAGCGACCACACAGAACCTCCAACAGGAGAAACGTTGGAACCCACGGGAGAACCGAGGGAATCTACGGGGTATCAAATAGAacagacacagaacacagaactcCGAGAACCCTCAGTGGAACCCACAGAGCAGACGGAACCGGAGGCGAGAGGAGGGGTTGGATTCTTCGTCAAGgAGGAGGTGCGTTGTGAAGATGAGATGGCTCAGAGGAGAGCTGCTCTGTTGGGGAGACAGCAGAAAAGAGCAGAGGacctgaagaggaggagacagtggaacgaacaggagagagagagcagACCCccctctgaggaggaggagcgaAGAGGCTCTCTCCCACagacccctcccctcccctgcacCCCTCCCCCCGCCGCCGGtgtcccctccctcacccccccgACCACGCCCAGTCGCCGTGGTGATTTCACGCGGAAGGAGTACGCCCACCGCCAGCAGATACGCATCATGTCTGACCTGGATAAGGTGCTGTGTCAGAAACACACCAATCAGGGAAGAGTCGCCGCCAAGAAGTCCCGCCCCCGACCTCGGAGCATGACCCGGGAGGAGTCACAGCTGTCCCGCAGCCCAGCCAAGAGCACTATGGgtTCTAAGTTGACTAAGGTgtactctcactcctctctcaacCTGGCTGCTATGGCTGACGACACCGTCCCTGACAACACCGTCCCTGACAACACCGTCCCTGACCACACCGTCCCTGACCACACCGTCCCTAACCACACCGTCCCTAACCCTAGCAAGAAACCATCCAGCCGCCCTGATTCGCCCTCACGTCTGATGTCACCGAGCcgactggccaatcagaacggaGACAAGGACTGGGAGATCGGCTCCAATGGCTCCTCCCCTTCCATTCCAGAATACACCGGGCCCAAACTGTTCAAGGAGCCGAGCTTCAAGTCCAATAAGTTCATCATCCACAACGCTCTGTCTCGCTGCTGTCTGGCTGGCAAGGTCAACGAGACTCAGAAGAACAAGATGGTGGAGgagATGGAGAAGAGTCCAGCCAACCACTTCCTGATTCTGTTCCGTGATTCCAACTGTCAGTTCCGAGCCGTCTACACCATGAGCCCCGAGACTGACGAGCTCATCCGATTGGCCGGGGTGGGCCCGCGTGTCGTAAGCCCCGCCCTGGTGGAGTCCATCTATAAGTACAGCTCCGACAGGAAACAGTTCAGCTGTATCCCGTCCAAGACCATGTCCATGAGTGTCGACGCCTTCACCTTACCAGGACACCTGTGGCACAGCAAGAGGCCTGGCAAGCCAAAATAaccatgtatatactgtatatacatacacacctgTGGCACAGCAAGAGACCTGGCAAGCCAAAATAaccatgtatatactgtatatacatacacacctgTGGCACAGCAAGAGGCCTGGCAAGCCAAAATAaccatgtatatactgtatatacatacatacaggaatggatacacacacacacaaacacacacaaacaactgaATTACTGTTTGTCCTGCATGGGACACACTACCCCTCTCGCCCTTCTCATCGGACCTACTGACTGTTGACGAGGTGCTTTCTCTCCCCTGTATGTGCATGGAAATGGAACAGTCCAACTATCCACCCTTATGGAGAAGGCTCTAAGACTCGTCCACACGCGGGGGATACTGAAGaccagttgttgttgttgtaaaaatgacCTTTTCAATCTTAAATGGTTACACTACACAGAAACAAACTCTACACAAAAAAAGTGCATCTTTCTCTTTTTTTAGTTAAAACGTTCTCCTGGAAATGTCTGAGGTACAAAATGATTGTTTCTCTGCTACCCATAAACCCTTTGGCCTTATGTTCTGTTCACTACTAGCTGAAAGGCTGGAGGCATGCTGATAGCCATTGTGTAGGTTGACTAAAGTTTTCTGTTTTATAACATGAACACGATCCTTCTAATGCCTTCTGCCCAACGACTGGCAGGCACAGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAATGACTGGCAGGCACAGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTtttattatcctgccaaccacttcTGCCCAACGACTGGCAGGCACGGGACTtttattatcctgccaaccacttcTGCCCAACGACTGGCAGGCACGGGACTtttattatcctgccaaccacttcTGCCCAACGACTGGCAGGCACAGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCAAACCACTTCTGCCCAACGACTGGCAGGCACGGGACTTTTATTATCCTGCCAACGCCTGGGTCAAAACAAGgaatggcagacgtgttgtttaATGTGAATAGGAAAAAAGAACAGGAGATGTGTGTTCACCAAATAGCACAAAATCAAAGATTGTACATAGCTGTGACGGACGGGCCATCattaaggcctagattcaatccgaTTCTGCACTATAGCTCGACTGAAATTTAAAAGCACCTGTTCCCGCATTCGCCAAGACTGCATTCTCGACAAACGCTGAATACGTTGGCCAAATCGGAAATTACCTTGAAATTTAAATCACGCTATAAGGCAGATGTTCTGCGCTATGGATTGAATCCCTAATCTGCCATAACTGATTTGTACAAAGACGCTGCAGCATGGACATGTGGTCtcacagtgcttgacttggacaggACCTCACCGGGACTGAGTACCGAACGGCACCTctaatgttctactgcttgacttGGACAGGAGCTCACCGGGACTGAGTACCGAacggcacctcaaatgttctactgcttgacttGGACAGGACCTCACCGGGACTGAGTACCGAACGGCACCTctaatgttctactgcttgacttGGACATGAGCTCACCGGGACTGAGTACCGAACGGCACCTctaatgttctactgcttgacttGGACAGGAGCTCACCGGGACTGAGTACCGAACGGCACCTctaatgttctactgcttgacttGGACAGGACCTCACCGGGACTGAGTACCGAACGGCACCTctaatgttctactgcttgacttGGACAGGAGCTCACCGGGACTGAGTACCGAacggcacctcaaatgttctactgcttgacttCCTGCACCTCTTACAGAATATTATCTCTAAACCTTTGCAAagttcctgcacctaaatataaacagtaccggtaCTCAAAATGAGTACTGGCACCTATTttagtccaagtcaagcactggttgTTATGGGTTGTCAGCCAATAGAAATGTAAAACCCTGACAGttaaaggtcaggggtcaggggttatgACCCACCCACGGTACAGTCGGGTTAATAAAGTAGATGT

Function

GO: NA

KEGG:

id description
K17493 CAMSAP; calmodulin-regulated spectrin-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299707 lncRNA downstream 175 6469808 ~ 6470298 (-) True G1140052
TU1299723 lncRNA downstream 17201 6453049 ~ 6453272 (-) True G1140067
TU1299713 lncRNA downstream 53746 6416339 ~ 6416727 (-) True G1140058
TU1299712 lncRNA downstream 54194 6414904 ~ 6416279 (-) True G1140057
TU1299672 lncRNA downstream 81787 6386555 ~ 6388686 (-) True G1140026
TU1299743 lncRNA upstream 14921 6523617 ~ 6524037 (-) True G1140087
TU1299752 lncRNA upstream 60229 6568925 ~ 6570828 (-) True G1140096
TU1299753 lncRNA upstream 62443 6571139 ~ 6573457 (-) True G1140097
TU1299755 lncRNA upstream 82094 6590790 ~ 6591102 (-) True G1140099
TU1299757 lncRNA upstream 82817 6591513 ~ 6592780 (-) True G1140100
XM_036940004.1 mRNA downstream 20418 6429122 ~ 6450055 (-) True LOC110485390
XM_036939982.1 mRNA downstream 164066 6248910 ~ 6306407 (-) False LOC110519908
XM_036939983.1 mRNA downstream 164066 6248910 ~ 6306407 (-) True LOC110519908
XM_036939984.1 mRNA downstream 190985 6248910 ~ 6279488 (-) False LOC110519908
XM_036939959.1 mRNA downstream 225860 6208137 ~ 6244613 (-) True LOC118938166
XM_036940016.1 mRNA upstream 36555 6545251 ~ 6584686 (-) False LOC110485423
XM_036940021.1 mRNA upstream 44121 6552817 ~ 6566927 (-) False LOC110485423
XM_036940022.1 mRNA upstream 44121 6552817 ~ 6584691 (-) False LOC110485423
XM_036940017.1 mRNA upstream 44121 6552817 ~ 6584693 (-) False LOC110485423
XM_036940018.1 mRNA upstream 44121 6552817 ~ 6584693 (-) False LOC110485423
TU1299538 other downstream 376957 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 421533 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 798226 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 1212950 5201055 ~ 5257523 (-) True G1138553
TU1299683 other upstream 97623 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 115456 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 120305 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 189686 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 270552 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile