RNA id: XM_036940016.1


Basic Information

Item Value
RNA id XM_036940016.1
length 2500
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110485423
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6545251 ~ 6584693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGCAGTGGAGGCGGGTACGTTGGGCTCCCAGGTTGTCCGAGGCCACATTctgacagtcagagacagagagcaagctCTGCCGCACCCTTTCTCTACCGCGCACAGGTAAACTGCGGCCAAACGACCAAAGTCACTCGAAAGTCACATTTGGATTGTAATTTTTGGCCAAATTTATGGATTAAACAAAAACTAAACTCGTGTCTGGAAGCGGATATGAAGGGATAGGCGCTAAGGCAAGACTAAGACCAAAGAGAAGGGACAACGTCTCAGCCCACACACGATTGGAGGAGATAGACGTCAATCAAACTGGACACCGTCCATTCCCTCCCACCCCTCATGGCGAGACCACCCCCAACCCACCAATAGGGCAAGTCCCATCCACTCGAACCCCCGCCACCACTCATCTGTCCGGACAATCCAATTGGTCCCCCTCACTCCACTTAACTCCTGCCCACTCTACGCTCCACCCCATCCACCCCATCTGATTGGTCAAGATGGACAAGTTGACAGACGATGTCCCCGGGTGCTACTACAACCGTACAGTGCAGTTCTTCTACGAACAAAGTGGCAAGAACATCAGCGCCCACTGGCGTCCTCGGGACTACGTGGTGGTGAGCCTGGGCATGGGTGTGTCTGTCATCGTCATCCTGGCCAACATCCTGGTCATGGTGGCCATCTTCATCAACCGACGATTCCACTTCCCTATCTACTATCTGCTAGGCAACCTGGCGGCAGCAGACCTGTTCTCAGGTATTGCCTACCTGCACCTGATGTTCCACACTGGGCCCTGGACCATCAAGCTGTCCAAGAACCAGTGGTTTGTACGCCAGACCCTGATCGACTCCAGTCTGACAGCATCGGTGTTGAACCTCCTGGCCATCGCCTTGGAGCGTCACCAGACCATCTTCaccatgcagCTCCACAGTAAGATGACCAACCGCCGCGTGGTGCTGCTCATCGCCCTTATCTGGGGCCTAGCCATCTTCATGGGCCTGGTTCCCACCATGGGCTGGCACTGTCTGTGTGACCTGGAAAACTGCTCCACCATGGCCCCCATGTACAAACGCTCCTACCTGGTGTTCTGGGCTGTGCTCAACCTGTTCACCTTCTCTCTCATGGTGGCTGCCTACACCAGGATCTTTGTGTACGTCAGACACAAGAGCCAGAGGATGTCTCAGCACACCAGCCAGATACGACACAAGGAGACTGTGTTCAACCTGATGAAGACGGTTTCTATGATCCTGGgtTGTTTTGTGATCTGCTGGACCCCGGGCCTGGTGTTGTTGATGTTGGATGGTCTGGGCTGTGAATCTTGCCAGGTGCTGCGTTATGAGAAGTACTGCCTGGTCCTGGCTGAGTGTAACTCCCTGGTCAACCCCATCATCTACAGCTTCAGAGACACGGACATGTTACAGACCTTCAAGCGGATCCTCTGCTGCCTGTGTCGCCGCGGCGACGCCGGCCGCAAAGACACGCTGTCCGGCATGCGCTGCAACACCCTGGAGCAAGAGCCGTATGAGAATGGTGATGCGGAGCTGGTGGAGAAGACCAGGGGAGCTCCTCTCATCCTGAAGGGAACAGAGGACATGATGACGTCCACAGAGAGCTGACACGAGCATGcgggcgcacgcacacacacacatagtgtgtGATTATTTGGGGGGAGTTTCTGAATCATGCTAAATGTTTTCATTGTATAGATGTGATAGTTTAGTTGTATTGATGTAAAATGTTgtttgtatgatactgtatgttacagaAAACATGACTACAGTTACCTACAGGCACTGacatttctgtttgaaacaaCTTTATTGACATTGTCCCATATACACTCCTCAGATATGTGTTGACACGTGGTCTACCTGAGCCAGTCGGCTCAGTAGAAAAGTCATCATTACAATCACAACTGTATATTTCTGACTTTATTTttcatttgacattttatttatgcatttttgttgttgttgatcttaCGATAATAGTCTGCGCTGAGTGTATACAGtgaggggagaggtgtgtgtgtgtgtgtgtgtactgcataaCATGTTAGGTGAGTTttaagaaggggggggggggggggggggtatttgtaAAGACATTTTACTGTTATTAAATGTATTGTTAGGTTCTGAACAGAGTAAAAACTCAAACGGACGACTGGTAAaaactcaaaccaagtttattcaccgcACTGAATGCCTCAGCTGCAAGCACATTTCACACATGATCAAACAGGCATTTATACATCAGGGGTGTATCTTCTCAGAACTGCCATCTGTTGCCCAATACTGCCTACATGTTGCATCGTTGTCTTGGCCTTCCAGCCATCTGCCAGCCGTCCCTCTTATCTGTCTAGCTGTCTGGAGAATGAAGGAATAGACTATAGGCCAGTCTGTATTGTAGACTGATGTGTTCTGGTTGTTTCTGTGACCTCACAATCAGTTTCATGGTCAGAAATGATGGAAACCGCTTCTATTAAAGAACCTACAACACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299743 lncRNA downstream 21214 6523617 ~ 6524037 (-) True G1140087
TU1299724 lncRNA downstream 55936 6488888 ~ 6489315 (-) True G1140068
TU1299707 lncRNA downstream 74953 6469808 ~ 6470298 (-) True G1140052
TU1299723 lncRNA downstream 91979 6453049 ~ 6453272 (-) True G1140067
TU1299713 lncRNA downstream 128524 6416339 ~ 6416727 (-) True G1140058
TU1299755 lncRNA upstream 6104 6590790 ~ 6591102 (-) True G1140099
TU1299757 lncRNA upstream 6827 6591513 ~ 6592780 (-) True G1140100
TU1299764 lncRNA upstream 9994 6594680 ~ 6595051 (-) True G1140101
TU1299765 lncRNA upstream 14116 6598802 ~ 6599032 (-) True G1140102
TU1299682 lncRNA upstream 15456 6600142 ~ 6602034 (-) False LOC110485426
XM_036940008.1 mRNA downstream 36555 6470473 ~ 6508696 (-) True LOC110487211
XM_036940005.1 mRNA downstream 36556 6470473 ~ 6508695 (-) False LOC110487211
XM_036940006.1 mRNA downstream 36556 6470473 ~ 6508695 (-) False LOC110487211
XM_036940007.1 mRNA downstream 36556 6470473 ~ 6508695 (-) False LOC110487211
XM_036940009.1 mRNA downstream 44677 6470473 ~ 6500574 (-) False LOC110487211
XR_005035756.1 mRNA upstream 7260 6591946 ~ 6593147 (-) True LOC118938537
XM_036940039.1 mRNA upstream 15455 6600141 ~ 6631856 (-) False LOC110485426
XM_036940025.1 mRNA upstream 15455 6600141 ~ 6648047 (-) False LOC110485426
XM_036940030.1 mRNA upstream 15455 6600141 ~ 6648047 (-) False LOC110485426
XM_036940031.1 mRNA upstream 15455 6600141 ~ 6648047 (-) False LOC110485426
TU1299538 other downstream 451735 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 496311 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 873004 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 1287728 5201055 ~ 5257523 (-) True G1138553
TU1299683 other upstream 21633 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 39466 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 44315 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 113696 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 194562 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile