RNA id: XM_036940017.1


Basic Information

Item Value
RNA id XM_036940017.1
length 3687
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110485423
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6545251 ~ 6584693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCGGGGAGCAGTGGAGGCGGGTACGTTGGGCTCCCAGGTTGTCCGAGGCCACATTctgacagtcagagacagagagcaagctCTGCCGCACCCTTTCTCTACCGCGCACAGGTAAACTGCGGCCAAACGACCAAAGTCACTCGAAAGTCACATTTGGATTGTAATTTTTGGCCAAATTTATGGATTAAACAAAAACTAAACTCGTGTCTGGAAGCGGATATGAAGGGATAGGCGCTAAGGCAAGACTAAGCGATACCTCTCCTGTCCATTTTGATGTGCCTCCAGCGATACCTCTCCTTTCCATTTTGATGTGCCTCCAGCGATACCTCTCCTGTCCATTTTGATGTGCCTCCAGCGATACCTCTCCTGTCCATTTTGATGTGCCTCCAGCGATACCTCTCCTGTCCATTTTGATGTGCCTCCAGCGACACCTCTCCTGTCCATTTTGATGTGCCTCCAGCGACACCTCTCCTTTCCattctacagACCAAAGAGAAGGGACAACGTCTCAGCCCACACACGATTGGAGGAGATAGACGTCAATCAAACTGGACACCGTCCATTCCCTCCCACCCCTCATGGCGAGACCACCCCCAACCCACCAATAGGGCAAGTCCCATCCACTCGAACCCCCGCCACCACTCATCTGTCCGGACAATCCAATTGGTCCCCCTCACTCCACTTAACTCCTGCCCACTCTACGCTCCACCCCATCCACCCCATCTGATTGGTCAAGATGGACAAGTTGACAGACGATGTCCCCGGGTGCTACTACAACCGTACAGTGCAGTTCTTCTACGAACAAAGTGGCAAGAACATCAGCGCCCACTGGCGTCCTCGGGACTACGTGGTGGTGAGCCTGGGCATGGGTGTGTCTGTCATCGTCATCCTGGCCAACATCCTGGTCATGGTGGCCATCTTCATCAACCGACGATTCCACTTCCCTATCTACTATCTGCTAGGCAACCTGGCGGCAGCAGACCTGTTCTCAGGTATTGCCTACCTGCACCTGATGTTCCACACTGGGCCCTGGACCATCAAGCTGTCCAAGAACCAGTGGTTTGTACGCCAGACCCTGATCGACTCCAGTCTGACAGCATCGGTGTTGAACCTCCTGGCCATCGCCTTGGAGCGTCACCAGACCATCTTCaccatgcagCTCCACAGTAAGATGACCAACCGCCGCGTGGTGCTGCTCATCGCCCTTATCTGGGGCCTAGCCATCTTCATGGGCCTGGTTCCCACCATGGGCTGGCACTGTCTGTGTGACCTGGAAAACTGCTCCACCATGGCCCCCATGTACAAACGCTCCTACCTGGTGTTCTGGGCTGTGCTCAACCTGTTCACCTTCTCTCTCATGGTGGCTGCCTACACCAGGATCTTTGTGTACGTCAGACACAAGAGCCAGAGGATGTCTCAGCACACCAGCCAGATACGACACAAGGAGACTGTGTTCAACCTGATGAAGACGGTTTCTATGATCCTGGgtTGTTTTGTGATCTGCTGGACCCCGGGCCTGGTGTTGTTGATGTTGGATGGTCTGGGCTGTGAATCTTGCCAGGTGCTGCGTTATGAGAAGTACTGCCTGGTCCTGGCTGAGTGTAACTCCCTGGTCAACCCCATCATCTACAGCTTCAGAGACACGGACATGTTACAGACCTTCAAGCGGATCCTCTGCTGCCTGTGTCGCCGCGGCGACGCCGGCCGCAAAGACACGCTGTCCGGCATGCGCTGCAACACCCTGGAGCAAGAGGTACTCTCCGAGAGCAACGGCAACAATcaccacgacaaccacaacgaCGACAACAATCATATAAGTCCCCGCGGCGACCACTCGGACACAGACGATTAGACGAGGACAGTAGACACATATAGGTGACAGACGTACGATGACGACGTAACAAGCAGTTACACCGTAACAATGTCAACACTGACAGGGTGCTATAGCAACTTTCATTACCATGCCCAGACAACTAGCTAACAGTCTTGTGACAACAATGTAGCTACACTGTCACAATGACATAAACTACACCGTAACAACAACGTTATGGCCTCCAAACTATACCATAGCAACCACCATGCACTGACACACCTTAACAACATCAACCACTGTAACCACTACAActtaacaaaacatttttttaaataactacaCTGGACAAAAGACCACTTAAGTGACTACTACCAAGTAACAAAATACCATGGCAACACCTACGTCAATGTAACACACTACCACGACAACACCTACAATAACAACAACGTAACAAAATAACATGGCAACACCTACGTCAATGTAACACAATACCACGACAACACCTACAACAACGACAACGTAACACAATATCACGACAACACCTACAATAACAACAACGTAACAAAATACCATGACAACACTTACAACAACAGAATTACAGTGGAACATGTACCACAACAATGTCACAAAATAGCCCTACAACAACCAGGCCTCGACGACCACCACCTCCCGATTCAgagagggttgggttaaatgcggaagacacatttcagtaggAGGCATTCGGTTGTACAACTGACAAGGTATCTTCCTCTCCCTTTACAAGCAGACAGAGAATATGGCCTATATGAGTGTTTGTAGCATCGTTGTTATAATACTGTATGTGGCGCTGTAACATAGCAGCCCTGTCAGTCTCTGTTCTAATCAATATAGAACCATATGAATAGTCAATCATGCAGATATTATTGTTTGGAAACTAACGGTAGCTGTACTGTCTGGAGAAGTGACTGCGTGTTATTAGAAACCGGAGCCTACGTGCTGTTTGTAAAAAGAGACCTGATCAAACATAACGTTGTGAGTGGATTGAGAGTGATGGGGCTGATTTCTCTACTCTGTTAACATGGTGCTGTTTGTAAAAAGAGACCTGATCAAACATAACGTTGTGAGTGGATTGAGAGTGATGGGGCTGATTTCTCTACTCTGTTAACATGGTGCCGTGCAGCTTCTAACGCAGATGTCTCAATCTgtgtgtctagagagagagagacgttctACAACGCCAAGACTTGAATGAGTCCGGTTGAGTAAGACCAGCCCCCCGCGGTGAATGTTTTGGTCTTCAGCTGGGTCCATACTGGACTCTGATAATGCAACTGTTTTCCATACAGACTTTCTATATAGTGACAATGTCTCTAGAACGTTGTTGGAACGTTGTAGGAAGGCTGTCTGCCACCCCTGGACAGCCTGGTGGGATGTGAACCAGATGTTAGTGGTTCAAACGGGTCTGACTAGTTGTCATGTTTCCTGTGACCTGTAGCTatggcatgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacccacacacacaccacacacacaccacacacacacacacaaacaaacacacggcTGACTCATCACTGTGTCGTTGCTCTCTGTGTGGAgacacaggagtgtgtgtgtgtttacagtaccCCACACAAACACCAGTTAAACGTCTACACATCCTGTCAGTGATGTCACTAATGGAGAACGAACACAATTACAGGCAGGGGGGGAAACATTTCAGTGTTGCACGCTATTCTGCACTAACTCTGGTGTGACAGTGAAATATGTTCCCCTCGTACTTACCCTACCCCACCCATGACACGGACTGTCATtttgttttacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299743 lncRNA downstream 28780 6523617 ~ 6524037 (-) True G1140087
TU1299724 lncRNA downstream 63502 6488888 ~ 6489315 (-) True G1140068
TU1299707 lncRNA downstream 82519 6469808 ~ 6470298 (-) True G1140052
TU1299723 lncRNA downstream 99545 6453049 ~ 6453272 (-) True G1140067
TU1299713 lncRNA downstream 136090 6416339 ~ 6416727 (-) True G1140058
TU1299755 lncRNA upstream 6097 6590790 ~ 6591102 (-) True G1140099
TU1299757 lncRNA upstream 6820 6591513 ~ 6592780 (-) True G1140100
TU1299764 lncRNA upstream 9987 6594680 ~ 6595051 (-) True G1140101
TU1299765 lncRNA upstream 14109 6598802 ~ 6599032 (-) True G1140102
TU1299682 lncRNA upstream 15449 6600142 ~ 6602034 (-) False LOC110485426
XM_036940008.1 mRNA downstream 44121 6470473 ~ 6508696 (-) True LOC110487211
XM_036940005.1 mRNA downstream 44122 6470473 ~ 6508695 (-) False LOC110487211
XM_036940006.1 mRNA downstream 44122 6470473 ~ 6508695 (-) False LOC110487211
XM_036940007.1 mRNA downstream 44122 6470473 ~ 6508695 (-) False LOC110487211
XM_036940009.1 mRNA downstream 52243 6470473 ~ 6500574 (-) False LOC110487211
XR_005035756.1 mRNA upstream 7253 6591946 ~ 6593147 (-) True LOC118938537
XM_036940039.1 mRNA upstream 15448 6600141 ~ 6631856 (-) False LOC110485426
XM_036940025.1 mRNA upstream 15448 6600141 ~ 6648047 (-) False LOC110485426
XM_036940030.1 mRNA upstream 15448 6600141 ~ 6648047 (-) False LOC110485426
XM_036940031.1 mRNA upstream 15448 6600141 ~ 6648047 (-) False LOC110485426
TU1299538 other downstream 459301 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 503877 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 880570 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 1295294 5201055 ~ 5257523 (-) True G1138553
TU1299683 other upstream 21626 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 39459 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 44308 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 113689 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 194555 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile