RNA id: XM_036940040.1


Basic Information

Item Value
RNA id XM_036940040.1
length 4517
RNA type mRNA
GC content 0.61
exon number 19
gene id LOC110485426
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6600141 ~ 6649233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGGAGACAGAGGGGATTCGTTCGTGGAGAGGTGACATTCCTCCGAATGACGTCCTGACGTTCCCCCTACGTCTGACGTCACTGACGTCGAACGGGGCTGTTTGTTCTGGATTCAGGGGTTAGGAAGACCTGCGCGCGCTGACAACCGACAGAAAAAGGTCACTACTCCACCCCTCTcgtcaaccaaccaaccaaaggAAGTCTAGCCACTCTCTCCTGCCCCCCCTCCAGGTCACTACTCCACCCCTCTcgtcaaccaaccaaccaaaggaagactggcccctctctcctgcccccctCTAGGTCACtactctacctctccattctgAGAGATGACACTCCCTCTGGACTAGAccaagcctgcaccacaacagaCAAACATACAGTCCAGCGTTTTGTGTGATGGCCTGAGAGGGCTTCCCAGTCtagcctgcctgcctctcccgGGTCCAAACTGTCTGACTGGGACTCCCCCCCTCCCCGCCTGCTACGCCCTGCCTCCGTTGCCATGGGAGACGGCCTGGAGGCGGGCAGCAGCCTAGACCCCGCCCCCCGCTCCCTCTCCTGTAACCCCCCGCCCCCCGAGACATGGAACCCCTCGAGGCCGAAACGACAGACCAACCAGctacagTACCTGTTGAAGGTGCTGCTGAAGACGCTGTGGAAACATCACTTCTCATGGCCCTTCCAGGCTCCAGTAGATGCCATCAAACTCGGCCTGCCtgatTACTATCAGATCATCAAGGTTCCTATGGACATGGGGACCATCAAGAAGAGACTGGAGAACAGCTACTATTGGAACGCCCAGGAATGTATGCAGGACTTCAACACCATGTTCACCAACTGTTACATCTACAACAagccTGGTGATGACATAGTGTTGATGGCAGAGTCTCTAGAGAAGATGTTTCTTCAGAAGATCTCTGAGATGCCCCAAGAGGAGACTGAGATCCCCATGGTTACCAAGGGGCGGAGGGCGGGGCAGAGAGAAGCAGgtctCCTGTCTAAGTCTGACTCCGGCCAGGAttcatctccctcctccaccccccacaCCCGAGGTTTCTCCTCCCTGTCGCCGGGCCCTCAGACTCGGAGTCTCCCCGTATCCCAGGGgccccccaccctccccctcgCCCTCCCCCCTCAGACCCAGCCCCCTCGCgttccccccacccctccctcccacgCCCCCCAGCTGGGACCACCCTTCCCCATCAGCCCTCTGGATGTCCTGGCCCAGGGCCTCACCTCCGTACCCCACCACCCCCCAGCCCACCCAGGCCTTCACCCTGCTGCCCCACCCATCCCCCAGAGCATTGCACCCCCAGCTAAGcaGAGGAAGAGCCAGAAGAGGAAGGCTGACACCACCACACCCACCGCCAACGACCAGCTCAGCGAGTCATCTCCCGTGGCGACGGAGCCCCCCCGCCCCCGCCGTGAGAGCAGCAGCCGCCCGCTGAAGCAGCCCAAACGAGACCCCGCCCAGCCCGACTCCCAGCACCACCTGGGGCTAGGCGGGGGGGTTCCCGGGGGCGGAGCGTTAACAAGTCACGGCGGGAGCCCCAAACGACAGgAGCAGCTGCTGTTCTGTGGCGGTCTTATCAGAGACATGTTGTCTAAGAAACACATTGCGTACGCGTGGCCCTTCTACAAGCCTGTCGACGCGCACGCCCTCGGCCTCCACGACTACCACCACATCATCAAACACCCTATGGACCTCGGAACCGTCAAGGATAAGCTGGACAGCAGGCAGTACAGAGATGCTCAGCACTTTGCTGCTGATGTCCGGTTGATGTTCTCCAACTGTTACAAATACAACCCCCCAGACCATGACGTGGTCAATATGGCACGCAAACTACAGgacgTGTTTGAGATGCGCTTTGCCAAAATGCCTGACGAGCTTGAGGAGAcggcccccctcccctccccctccccagcccTCAAACCCCTCCCCACCATCTCtgccctccaccccctccccgtccccaccctccaccccctccccaccccctcgGCCAGACAGCCCCCTGCCCCCcgacccccctcctcctccgatGACAGCTCCTCCTCGTCGGAATCAGAATCCTCTGAGGGAGGTTTGGAACACgagagaacacagagactggCTGAACTACAGGAACAGCTCAAAGCTGTTCACGAACAGCTGGCCGCTCTGTCCACGCCCCAGGCCACCAAGCCCAAGAGAAAAgagcgggagaaggagaagaataaAGACAAGTTCAAGAAGAAGATAGGAGGGGAGGAGCCACCGGAGATCCTGCCCCCTGCCATcctccagccaatcagaaagaGCAAAAACAGCAAGGAGCTGGTGACCACGCCCAAGAAGATCAAGAAACCGAGTAAGAAAGAAGGTATGAAGAGCAGCCGTCTGGGCGCCCCACATCAGACCGGCTCCACCCCCCTTGCTCCCTCAGCCTCGCTGGAGGCACAAGATgacatgaGTGTGTTTGTGGGCGGGGCAGCTGACAGGTGTAAGCCAATGTCCTACGAGGAGAAACGCCAGCTCAGTCTGGACATCAATAAACTGCCCGGCGACAAGCTTGGCCGCGTCGTCCACATCATCCAATCACGAGAGCCATCGCTCAAGAACACCAACCCAGACGAGATAGAGATCGACTTTGAGACGCTGAAACCCTCGACGCTCCGAGAGCTGGAGACATATGTCTGGACCAGCCTTAGAAAGAAGAaatcccagccagCAGTAGAGAAGGCTCTGGAGGTGACCAGTGTGATGAAGATGAAGACAGGATCTTCATCAGGCAGCAGTGACTCCTCTGACAGCGAcgacacagggctggCCCCCCAGCAGCAAAAGTCCTCCTCTAGCAATATATACTGTAAGAGACCCCACCAGTCCAGCAGGGGCGGGGTCAGCATCACTGCCCCTCtggacccctcctcctccccccagacCCCCCTAGTTCAGTCCAAACCCCCCCAGCAGCAGCATCAACACCCCTtcgccccccctcctcctccctccatccccactgTCCCCGTGACCTCTCTGGACTCCTCTTTGACCTTTGACCCCCTAGTTCACTTCCTGGCCCCCCATCTGAGCCAGCAGGTGGGGGAGCCCCCCCGTAATGAACTGGGGACCCCTGCCGCCGGACCCCCCCACCTCAAcgctaccaacacacacacctctgagagCACACAGCCCTTCCTCAACCAGCAGGCCGTCATGCCCTCCGCCATGCTCTCCCCAGcactccacaaCGCTCTCCCCCAGCAGCCGTCCCGCCCCAGCAACCGAGCGGCCCCCAAACCCCCTCAGCCTCCCCcctcctccgctcctcctcccccccagccctccctccacattccccaaccctccctctccattccccaaccctccctccctcgcccttgtatcccctctcccctcacccccCACGGAATCCTGGGGGTCTCGGCCCAACCCCCTCAAGCCCTATTTGAGGACGACGAGGAGGCCGTGCCCACTAACTCTGAAACCCCTCCCCTCCCGCTCAGCCAGGTGCACATGTACCTGCAGTCGTCTCGGCCCCCGGCACACATACACCCCCACACACAGTCTCCTGTGCGGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGTGCGGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGTGCAGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGTGCGGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGTGCGGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGGGGGGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGGGGGGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGGGGGGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGGGCGGGTCCAGTCTCAGCTCATGTCCCGGCTCCCGGCCCACACACAGTCTCCTGGGCGGGTCCAGTCCCGGCCCTCGGCCCACACACAGTCTCCTGGGCGGGTCCAGTCTCGGCCCCCGGCCCACACACAGTCTCCTGGGCGGGTCCATTCTCAGCTCATGCAGGCCATGCAGACTCAGTCACAGGCAGCGGCCGCTCCAACCCAGCAACAGCAGAGGCTCGcaacacattctcacacacaccctcactcacACCCTCACTCACACGCTCACGCACAAATGCAGCAGGCGGGACAGGGGATGTCGTTCCCCCAGCAACAGAGCACCATGCACCCGGCACAGAAAGGGATCAAGCAGATACTACATCCACAACCATCACCACGGATCAAAACTGAGCCTTTCAACacagGTCCTCTGAGGGAGAGCCCCTCCCCTCTGATGATACATTCTCCCCAGATGCCTCAGTTCCCACCAATGAGACAGTCCCCTTCCCAGCCCAAGAAACCTAACCAAAGGGGATTATTAGGGGTTAAAGAggacctgtgtatgtgtgtgttaaccctgtgttcTCTCTAGAACCAGGGGGTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299689 lncRNA downstream 12221 6602213 ~ 6602564 (-) False LOC110485426
TU1299682 lncRNA downstream 12751 6600142 ~ 6602034 (-) False LOC110485426
TU1299765 lncRNA downstream 15753 6598802 ~ 6599032 (-) True G1140102
TU1299764 lncRNA downstream 19734 6594680 ~ 6595051 (-) True G1140101
TU1299757 lncRNA downstream 22005 6591513 ~ 6592780 (-) True G1140100
TU1299774 lncRNA upstream 49149 6698382 ~ 6700213 (-) True LOC118938170
TU1299802 lncRNA upstream 87683 6736916 ~ 6737218 (-) True G1140134
TU1299641 lncRNA upstream 129143 6778376 ~ 6778862 (-) False G1139998
TU1299640 lncRNA upstream 129225 6778458 ~ 6778963 (-) True G1139998
TU1299818 lncRNA upstream 136004 6785237 ~ 6785670 (-) True G1140150
XR_005035756.1 mRNA downstream 21638 6591946 ~ 6593147 (-) True LOC118938537
XM_036940017.1 mRNA downstream 30092 6552817 ~ 6584693 (-) False LOC110485423
XM_036940018.1 mRNA downstream 30092 6552817 ~ 6584693 (-) False LOC110485423
XM_036940019.1 mRNA downstream 30092 6552817 ~ 6584693 (-) True LOC110485423
XM_036940022.1 mRNA downstream 30094 6552817 ~ 6584691 (-) False LOC110485423
XM_036940044.1 mRNA upstream 6311 6655544 ~ 6678564 (-) False LOC110511140
XM_036940047.1 mRNA upstream 6311 6655544 ~ 6678564 (-) False LOC110511140
XM_036940042.1 mRNA upstream 6311 6655544 ~ 6678569 (-) False LOC110511140
XM_036940043.1 mRNA upstream 6311 6655544 ~ 6678569 (-) False LOC110511140
XM_036940045.1 mRNA upstream 6311 6655544 ~ 6678569 (-) False LOC110511140
TU1299538 other downstream 521269 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 565845 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 942538 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 1357262 5201055 ~ 5257523 (-) True G1138553
TU1299773 other upstream 49149 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 130015 6779248 ~ 6782137 (-) True LOC110510388
TU1299840 other upstream 196177 6845410 ~ 6852671 (-) True LOC110494877
TU1299886 other upstream 270496 6919729 ~ 6952206 (-) True G1140208
TU1299907 other upstream 278469 6927702 ~ 7076651 (-) False LOC110513509

Expression Profile