RNA id: TU1299682


Basic Information

Item Value
RNA id TU1299682
length 1820
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110485426
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6600141 ~ 6649233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagggacaAGTGAGCGGgctgtgtgtgttatcatgtttgCGTCCcaaaagggcaccctattcccttcatatagtgcactacttgtgtcCAGGACCCATGGGGATCTGATCAAaggtggtgcactatatagggagtagagtgccatttgggacgtatacCCTGAGATGGGTTGAGTTTCTCTCCGGACAGCGGGATGAACACCGGGGTCACAACCCAACACTATAAAGAGGcgcccttccttccttccttccttctcacTCTCCTTGGTCTTTGTGACATCACTGACTTGACACAAGTTGAAAGTGTAAAAGCTTGAACTCCATTTTTTTCAGTCATGTCTGATTCATTGATTATTtcaagaaaggagggagagagggaagaaaggagggagagagggaaAAAGAGGAAGGATGAgtgaagaaaggagggagagaggggacggaagagaggaagggagggggggggggggggggtacattttAAAGGTGTTGGAATGTGGCTCTTGCCTTACAGCTCTGACCTGTAAATGAACACACGCCACAgattatacacatatatataaatagatgcagaaatatatattatatacgaTGAAAAGTCCCTAAAAATAATTGGATGATGTTGTTGGGAGGGAGAATGACTTATCTGCCTTGTGCTCAATTCCCTTTTGTTTTTTTTAGAGAAGTGACTGTAAGAAAAACAACTTTTTTATGATGCTATAAAAAAATAGTTTGTCTCGTTCATAACCTCCTTTCTATCATCCTGTTTTTCTCGGTATCAAGTTCAGATATGCAAGAGTTTTAAAGGCCTCTGTTTTTATTTAaatatcaaatcctttctgggtaacaattaggtACGTTACTGTGATTTTGTTTTCAGTTGAAATGGcccaaaataaacaaaaatatagattctcagcaaagagcaatttctcaagcaaacaTTTTGCTAgagctgtctgggagtggtctgagtggggagggggaaactgaaaacgagctgttattggcagagagatttggaactctttcttattggtcgaTCAACTCATTTAACGCacggtgatgtcaccaggcaggccaaaactccaccccaccaaaacaggctgattTTTCTTTTCACACAGCTCCTACACTTAAAGggtattatcatcattttcacaatttaacAGTATTATTCCAGCCTTTATAGTGTGGAAATAGATAtataaacacaggaaaatcactcTTTTGACGGCACTGGCCTGTAACTACTTAACTTTGTTCTACTGTTCTGTAGCTACGTCCACCTGCTGCCACACTTCCTTTATTTTCTCCTTTAGCTTCTTACTCATTTTCTTTTTACATATTCATGTCcatctgttaatctctctctcctgtcatcatcatcatcatcatcatcatcttcctctACCATCCGTAGCATAGCTTTTATTTACTTCTTATTCCCTTCCTGTTTTTTGGTTACAATTTTTCTGCTATGTTTTTAGTTTCCGTGGTAACAGTCGGGGTTGTTGTCATGTGCCATAGCTCTAAGTGTTCTGGGTGTGCGCGGCCTGCGGTGTTGTCATGTCCAGATATACATCAAACCCCTGTATtctttttgggatgtttttttaatttaatttagccTTTCTTTTCATATTTGacggttgtttgtttgttttgttttgtttcttgtcattgtttttgttttgttttgaatcACCGGTTGGTTTGTTGATGAGTGAGGTGTTAAGGTCGATGGATACGTTCTGATTATGGAGTAAAACATCTTCTTTCTTTTTTAAAGAAAAGTATTAAAATGATATTAAAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299765 lncRNA downstream 1110 6598802 ~ 6599032 (-) True G1140102
TU1299764 lncRNA downstream 5091 6594680 ~ 6595051 (-) True G1140101
TU1299757 lncRNA downstream 7362 6591513 ~ 6592780 (-) True G1140100
TU1299755 lncRNA downstream 9040 6590790 ~ 6591102 (-) True G1140099
TU1299753 lncRNA downstream 26685 6571139 ~ 6573457 (-) True G1140097
TU1299689 lncRNA upstream 179 6602213 ~ 6602564 (-) False LOC110485426
TU1299774 lncRNA upstream 96348 6698382 ~ 6700213 (-) True LOC118938170
TU1299802 lncRNA upstream 134882 6736916 ~ 6737218 (-) True G1140134
TU1299641 lncRNA upstream 176342 6778376 ~ 6778862 (-) False G1139998
TU1299640 lncRNA upstream 176424 6778458 ~ 6778963 (-) True G1139998
XR_005035756.1 mRNA downstream 6995 6591946 ~ 6593147 (-) True LOC118938537
XM_036940017.1 mRNA downstream 15449 6552817 ~ 6584693 (-) False LOC110485423
XM_036940018.1 mRNA downstream 15449 6552817 ~ 6584693 (-) False LOC110485423
XM_036940019.1 mRNA downstream 15449 6552817 ~ 6584693 (-) True LOC110485423
XM_036940022.1 mRNA downstream 15451 6552817 ~ 6584691 (-) False LOC110485423
XM_036940040.1 mRNA upstream 12751 6614785 ~ 6649233 (-) False LOC110485426
XM_036940044.1 mRNA upstream 53510 6655544 ~ 6678564 (-) False LOC110511140
XM_036940047.1 mRNA upstream 53510 6655544 ~ 6678564 (-) False LOC110511140
XM_036940042.1 mRNA upstream 53510 6655544 ~ 6678569 (-) False LOC110511140
XM_036940043.1 mRNA upstream 53510 6655544 ~ 6678569 (-) False LOC110511140
TU1299538 other downstream 506626 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 551202 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 927895 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 1342619 5201055 ~ 5257523 (-) True G1138553
TU1299683 other upstream 4285 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 22118 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 26967 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 96348 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 177214 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile