RNA id: XM_036940047.1


Basic Information

Item Value
RNA id XM_036940047.1
length 2814
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC110511140
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6655544 ~ 6678570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGACCCTAGCTAAACATATTCGCCCACTGCTGTGTCCGTTGCTCCTGGTTTTGCTAacggctacagtagctagctttatatatatttttaaaaatccgTCAACAACAATAACATATCATCAAATTATGGAAGGCCGTGGCTACAGTTCAGGATACTCGAGCTGGGGAGGAGGGTCGGGGAGccgagACAACTATGACCCGTATGGAGGGGGCTACAAGGACTCCATGTCAGGGATGGGGGGCTACGGAGGGGGGCACAAGAGGGGTCTCTCTGGGAGCTCTCTGTTGTCGACGGGGACCAGTGCAGACGCTGTCATCGCTAAGATCAACCAACGCCTTGACATGCTGACCCAGCTGGAGGGAGGCATGAAGGGTGGGGGGCGCAgcgacagGTTTGACCAATACGAGTCCTTCGACTCGCGgggtccctcctccctcccctcccgggATCTCTACAGATCCGGTAGCTATGGTTACGGCGATGGCCGAGGGGACATGACCCAAAGAGCTTCAGGCTTCGGAGGAGGTGGTGGTCTAGGCTCAGGCTTTGACAGCTCCTCCTCCTACGGAGCTGCTAAGATGCAGCGTCAGAACATGAGAGACTCCTTCTCCAGTGGCCAAGGAGGAGGAAGCTGGGCCGGAGCAGGCCAGCGCTCCCCGAGGAGGGGGGGAGGCCGCGGAGGGTTTGGAGGCCGCAGATCCGACCCCACTCCCatgggtggaggtggtggtaggatgggtgggagaggaggaggccgGGGAGGTGGCGGTCACTCCCCTGGGGGTAGGGGCAAGCTCCCATCCCTCCTGGGTCACCGCATGCCCCCCCAGACCGGGGCCTTCCACCAGTCCGCTCAACAGGGCCGGGTCCCTGGGCACCAGGACTTCCCAGGGCGCCACTTTGGAGGGGGCCCCCAGGGAGGCCACCAGCGCGGGCGCAAGAGGCCCCTCAACCGAcagcagcagcagcctggtGGTGGTCAGCGTGACGGTCAGAAGAAGAGAAAACAGACTCTGACCGCAGCAGATGAACCAGAGTCCAAGATGAACAAGACAGAGAGCGCAGGTGGAGAGACCGCTGAAGaaccAGCAGAGAACAACGGTGAAGAAAATGAGgcaACCAAAGCCCCAGCTGATGGAGAGAAAGtggtgTCGATGCAGGAGGAGATCTCTCAGATGAAGAAGAAGCTCCAGACAGGGAAACAGACTCCTCCCCAGGACAAGGTCCCCaaaaacaggaggaagaggggcgGCTTCCTGGAAAGGTCAGGGGTCACACTAACACCCAAAAGTCAAACCCAGAGGGTGACGTTTGCGTGCTCGGTGTGTAAGTTCCGTTCGTTCTACCACGAGGACATGGCGGCCCACCTGGAGAGCAAGTTCCACAAAGATCACTTCAAGTTCCTGTCCAGTCAGCTGTCCAAACCCACCACAGACTTCTTACAGGAGTACCTGAACAACAAGTATAAGAAGACGGAGCAGAGGACCAGTCAGATGGAGAACCACTGTGCTGCCATCTGTCAAGTCTACAAGGAACAGGACCTCACCAGGCAGTTGGGTATGGAGCACTTCATGAAGAAGGTGGAGGCAGCCCACTGTGCAGCCTGTGACCTATTCATCCCCATGCAGTTCTACGTCATACAGAAACACCTCAAGTCCCCCGACCACAACTTCAACCGCAAGGGTATGATGGAGCAGTCTAAGAGGGCCAGTCTGTCAGTGGCTCGCAGCATCCTCAACCACAAAATCATCGGAAAGAAGCTGGAGAGTTACCTCAAGggtGAGAACCCCTTCCTCGGTAACCAGGACGACCAGGACCCAGAGGACTCAATGATTATGGAGGTGTCAGAGGCTGAGCTGACCAATGAGAGCCTGGCGGAGACCACCAAGGAAGAGGCGGGGCCAGAGACATCGCAGGAGGCCACCGGGGCTgatggggtagaggaggagaagatggaggaggggggagtggcggtagcagatggaggggaggaagaggcgCAAGTAGAGAAGCCagcgggaggagagggggacacgCAGGGTGAGGAGGAGACGCAGGGTGAGGGGGAGGCTGAGGGAGAGCTGGAGCaggtaggagaggaagaggaggaagggttTGAAGTAGGAGATGAGtttggagaggaggatgagggagtggaaggagagctgggagaggaagaggaggatgaaggagtgggaggagaggatgagagtgtGGCGGTAGAGAAGAAAGACGAGGATGCTGACGTGGTCGTCATAGAGTGACCTTTACTCTCAATGACCCTTTGACCTCCCTCTGGACCAATTAATAcagccctctctcccctgtccagcCAATCCCACTCTACCCCTTCCACAAACAGCCAATCAGATTCATTTATACTTACCCCCCCCCTCCATTCAGAACCGATACTCACTAATAAACTTCTGATACATCTGTTTTCATATATAGTTTCTCTTCTGTGTAAGTAGACTTTTTTTGTTGTGCCTTTTGAATCTGTCGGTCTGTGTTGGGATATTTTGACAATGCTTCAGTGGGTAGAGGACCGTGAACTTAGTGTTATTGATATGACACACCCCCTACCTGGTATTACTACTGGACGCACCCCCTGTCCGTCATAGCTAGATTCCTAGGAAGTCTGAGCTGATTGGTTCGTCTCTTATTGACTCCTCCCAAACGTGCAAAAACgtatttgaaatgtatttgttGGTGTGTTTAGATGGAAAGACGGGGCAGGATTTAGTTTTACAGACGGTTGCTGTTGTCATCCATGTTGTTTTTTGGACAGATGAgaataaatgtttaaaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299689 lncRNA downstream 52980 6602213 ~ 6602564 (-) False LOC110485426
TU1299682 lncRNA downstream 53510 6600142 ~ 6602034 (-) False LOC110485426
TU1299765 lncRNA downstream 56512 6598802 ~ 6599032 (-) True G1140102
TU1299764 lncRNA downstream 60493 6594680 ~ 6595051 (-) True G1140101
TU1299757 lncRNA downstream 62764 6591513 ~ 6592780 (-) True G1140100
TU1299774 lncRNA upstream 19818 6698382 ~ 6700213 (-) True LOC118938170
TU1299802 lncRNA upstream 58352 6736916 ~ 6737218 (-) True G1140134
TU1299641 lncRNA upstream 99812 6778376 ~ 6778862 (-) False G1139998
TU1299640 lncRNA upstream 99894 6778458 ~ 6778963 (-) True G1139998
TU1299818 lncRNA upstream 106673 6785237 ~ 6785670 (-) True G1140150
XM_036940034.1 mRNA downstream 6311 6600141 ~ 6649233 (-) False LOC110485426
XM_036940049.1 mRNA upstream 19755 6698319 ~ 6717101 (-) False LOC118938170
XM_036940050.1 mRNA upstream 22439 6701003 ~ 6717102 (-) False LOC118938170
XM_036940054.1 mRNA upstream 101442 6780006 ~ 6831814 (-) False LOC110510388
XM_036940055.1 mRNA upstream 101442 6780006 ~ 6831814 (-) False LOC110510388
XM_036940058.1 mRNA upstream 163907 6842471 ~ 6851608 (-) False LOC110494877
TU1299690 other downstream 6417 6629001 ~ 6649127 (-) True LOC110485426
TU1299693 other downstream 26724 6624152 ~ 6628820 (-) False LOC110485426
TU1299683 other downstream 38548 6606319 ~ 6616996 (-) False LOC110485426
TU1299538 other downstream 562028 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 606604 6044857 ~ 6048940 (-) False LOC110512654
TU1299773 other upstream 19818 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 100684 6779248 ~ 6782137 (-) True LOC110510388
TU1299840 other upstream 166846 6845410 ~ 6852671 (-) True LOC110494877
TU1299886 other upstream 241165 6919729 ~ 6952206 (-) True G1140208
TU1299907 other upstream 249138 6927702 ~ 7076651 (-) False LOC110513509

Expression Profile