RNA id: XM_021570206.2


Basic Information

Item Value
RNA id XM_021570206.2
length 3956
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110494877
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6842471 ~ 6853303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAGCAACTCCGCGTTTTCCAAGTTataataaatatttatatatgaGACGTGACTTGATACGTTGCTGATTTAAGGATTACTGCCCCTACTAGAATGCGAGATCATCTAAATAGCTAGAACTCTATGAaaaggacagaaacagagagagcaagCTAACAGAAGTACTAGCATCGTTAGCATAGGTGGGTGGCTGTTTTGTTTGCTGCAGTACTGTTAACGTCAGAAGCTGGCCTTTATTGATAAAGCACCGTATATGGATCCTCACATCAGTGTTAAAGACGAACCCACTAGTGATGATGACGTTACACACAGCTGGTGCAACCCTGTCCAGCCCTCACAAATGGACTACAGTCATGAAGGTGCTGTTGATAAGTCTGGGTTGGAACCAGATGACCTTCCAGGCCTCAGTGAGGCAAGAAAACCAACATTCAATGTGATtgtcaaagaggaggaggaagatgaggatgatgaggaggacaTGGTTGACCGAGGTTCAGACACCAACTACACACCAAGTCCCGCTGTGGTAGTGAAGGTGGGAGAACCCAAAGCACCAAAGAATAAGAACACAGTAAAGAAACTCCACCAGTGCCCCGACTGCGGTAAAACCTTTGAGAGGCTGTCGCGTCTGAAGAGGCACGAGCCGTCACACTTGAGGAAGAGCAAGCACCCGTGCCCCGACTGCAACCAGTCTTTTGGCAACCTCTCAGTCCTGAAGAAACACAGGGCAACACACAAGAGCACCGAGAAGCCGACTCACCAGTGTCAACAGTGTGGCAAGACGTTTGAGAAGCTGTCGCGCCTCAGAAGGCACCAGCCCGTACACCAGAGGAGAAAGAGGATGGACCACCCGTGTCCTAAATGTGGCAAGACCTTCAAGAAGTTATCCGGCCTGGTTCGGCACGAGCGAGGacacaccggagagaaaccgTTCCCTTGCTCCCAGTGCGGGAAGAGCTTTGCCGACGACCGTCACCGGAAAGTGCACGAGCAGGCTCACCAAGGGAAGCTGGAGAGACCCCACCGCTGTGCTGACTGCGGGATCTGCTTCCCCAAACCATCCGAGCTTCGGCGGCACCAACGCGCTCACACGGGAGAGAAACCGCACCGCTGCCCTAACTGTGGGAAGGCCTATTCCCGGTCAGAGACTCTGAAGAGGCACCTTCTCATCCACACGGGGGAGAGACCTCACCTCTGCACTGATTGTGGGAAAAGCTTCATTGACTTGCAGCAGTTGAAATCTCACCAGCGgattcacactggagagaaaccattCCACTGCCCCGTGTGTGGGAAGGGTTTCTCACAGAGGGGTAACATGAGGGCACACCATCGgactcacacaggggagaaacttCACCACTGTGCCGACTGCGGGGCCAGTCTCTCCACATCTTCTAGTTTAAAAGAGCATCAgctcattcacacaggagagaggcccTTCCAGTGTCTGGTCTGTGGCAAACGCTTTCTGCACATCTGGAGACTCAGAAAACaccagaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccggactaAGACACACACCGGACTAACACACACAACGGACTAACACACACAACGGACTAACACATGCCGGACACACGCTGGATACACATAAGGAAGACGTCTCTGTGTGCTTTGAAAGAGCAGCAACTGTAGTGttgtactactactattaatactactaataTGAATACGACTAATATTAATACTACTAATATTAATACTACTAATAGTTAATACTACTAATATTAATACTaggattgtgggttcaattcctgggaccacccatacgtgaatgtgtgcatgcatgactgactttggataaaagcatctactAAATGACTGTTATTATTAATGTCAGCAACCCAGAACCAACACAAATAATTTAATTAACTTTAATAGCTTGCAGTAGGGATCTGCTTGTGAGTATTAAAATGACATATGTGTATAGAGGAGGtgtactacaaagcaggatcaattaGTTATCCAGCTAACTTTGATAAGCAACCAGAAATATCTATTGATTTTTCTGACTAATTAATGCATTCAAAATGAGATATGCGTTGTTGGTTGAGTCAGCTATACAATGCCAATTCCAAGCTTCTCTTTCTAAAAACAAGAAAAGGTCATATCAGAGTATTTAGACAGGCTGACTCATTGAATGGTCTTTGTAGTTTAGCCCTCTGGTCTACGCCTCGTCCCATTTTAATCAACACTGAACAATGCTCTTTATACGTCTGACATAACTATTTTAATGGTACATTTAATAGGCTtgtgttttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtacacgttttactatacttgtgagtaccagaagtcctcaTGAATAGTCAACTAACTAAAATCCAGAGAAGGACTTTTTTTTTCAGTCTTCACTTGTAAAAAggttattttaggcttaggggttaggtttacagttagggtttaggggttaggaaaaaataggattttgaatgggaatcaattgttggtcCCCAAAAAGTCCTGCAATGAAGCCCATTATCTGTAGTCTAGGTAACGGACTCTCCAGCTAACATCCCACTCCTCGTCACTCCTCGTCACTCCCAAAGAGACTGGCCTTTCAGCCATAGAAATATGAATAGAAAGGTGTCaacattcaagtcaatgatggcataatgggtggcagccattttgagtgtATCCAtgccaggaagtaaaagcaggaagtgtaccctttaatctgtgctgtgatttgttgagtgAACTAAActgatgtttaaaaaatatatatacattccattgcatgagccacatcagttagtATCATTTGAATGAGCATTTTACATTACCATGGCAACCCAGCATCAGCTGATAGAACATTTCCAAAATACCATGAACATTATTGCATCAATATTGTTCAATATGCACTGGATTTATGGCGGAGTTGCTCCTTGGCTGTTGGAAATAACATTCATATTTTCCATGACAACATGTGGAGCCTCAATTGGAATACAAAGTAAAAACAACATTTAGCTGTTAGCTAGGCAAGTTATTTTTAGGTTTGAAAATCTACACGGAGGTTTTTGTGGGTTGGAATTGAAGTAGGTATTTACttcatttaaattccagtcaattcagtaCACTGAAATGTCAATTCTCTTCAATACTTTTCAATGAGGGAAATGTGGAATTGGAatagtttactttctgaattgactggaattgaccccaaccctgcacaAAAGCCCATATTTGTCCTCGAGGCTTCCACATCGTTTACTTTTTTTTCCCCCATTGAGGCCCCCATTATTAGCCAAATAATGGCCATTCTGCACAACAAAAACATTCAGACAGGCCCACCCATTGGGCTAATGATGGACTAGACCATCACTGTTGCCAATCGACCCTATATTATAGGCTACCCTTGCCTTGCCCCAGTCATTCTATAAGTATACAATGATATGTTGTATGGTAGGGTATACTTTATTCTGTAGACACTAGGAAATACTCTGACAGGTTACATTATGATTACAGTGTGCTGTATTCTAGTATATACTCTGATAGTTTACATTATTACTATTCTACTAGATTCTAGGATATAATCTGATACATTATGATTCTAGGATATACCCTGATAGGTTACATGATTCTACTGGATTCTAGGATATACTCTGATAGGTTACATGATTCTACTGGATTCTAGGATATACTCTGATAGGTTACATGATTCTACTGGATTCTAGGATATACCCTGATAGGTTACATGATTCTACTGGATTCTAGGATATACTCTGATAGTTTactgccaagaaggccagcacCCCGgaatcacctcttcactgttgacattgagactggtgttttgcgggtactatttaatgaagctgccagttgaggacttgtgaggcgtctgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299831 lncRNA downstream 6678 6835508 ~ 6835793 (-) True G1140161
TU1299823 lncRNA downstream 27708 6806719 ~ 6814763 (-) False G1140154
TU1299824 lncRNA downstream 29892 6806719 ~ 6812579 (-) True G1140154
TU1299820 lncRNA downstream 40375 6801624 ~ 6802096 (-) True G1140151
TU1299818 lncRNA downstream 56801 6785237 ~ 6785670 (-) True G1140150
TU1299850 lncRNA upstream 2351 6855089 ~ 6855312 (-) True G1140174
TU1299863 lncRNA upstream 32782 6885520 ~ 6885721 (-) True G1140187
TU1299873 lncRNA upstream 50369 6903107 ~ 6903366 (-) True G1140196
TU1299874 lncRNA upstream 50633 6903371 ~ 6903665 (-) True G1140197
TU1299877 lncRNA upstream 57695 6910433 ~ 6910645 (-) True G1140200
XM_036940054.1 mRNA downstream 10657 6780006 ~ 6831814 (-) False LOC110510388
XM_036940055.1 mRNA downstream 10657 6780006 ~ 6831814 (-) False LOC110510388
XM_036940050.1 mRNA downstream 125369 6701003 ~ 6717102 (-) False LOC118938170
XM_036940049.1 mRNA downstream 125370 6698319 ~ 6717101 (-) False LOC118938170
XM_036940048.1 mRNA downstream 163901 6655544 ~ 6678570 (-) True LOC110511140
XR_005035428.1 mRNA upstream 19807 6872545 ~ 6874113 (-) True LOC118938173
XM_036940064.1 mRNA upstream 126401 6979139 ~ 7000354 (-) False LOC110513509
XM_036940080.1 mRNA upstream 431978 7284716 ~ 7290833 (-) True LOC110485501
XM_036940079.1 mRNA upstream 463576 7316314 ~ 7403758 (-) True LOC110519431
XR_005035433.1 mRNA upstream 488338 7341076 ~ 7341680 (-) True LOC118938181
TU1299636 other downstream 60334 6779248 ~ 6782137 (-) True LOC110510388
TU1299773 other downstream 133493 6698382 ~ 6708978 (-) False LOC118938170
TU1299690 other downstream 193344 6629001 ~ 6649127 (-) True LOC110485426
TU1299693 other downstream 213651 6624152 ~ 6628820 (-) False LOC110485426
TU1299683 other downstream 225475 6606319 ~ 6616996 (-) False LOC110485426
TU1299886 other upstream 66991 6919729 ~ 6952206 (-) True G1140208
TU1299907 other upstream 74964 6927702 ~ 7076651 (-) False LOC110513509
TU1299928 other upstream 81294 6934032 ~ 7080027 (-) False LOC110513509
TU1299913 other upstream 81852 6934590 ~ 7081455 (-) False LOC110513509
TU1300005 other upstream 186139 7038877 ~ 7042520 (-) True G1140269

Expression Profile