RNA id: XM_036940076.1


Basic Information

Item Value
RNA id XM_036940076.1
length 3355
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC118938174
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7443617 ~ 7496780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGGTTCACTAAAATGGAGGCTGGTAAAGAACCTAAAGATCTAGGTCAGGACCCAGAGTATGCAGGTCGTCTGGAGTATCATGGAGATAAGAAGAAAGACTGTACCCTGAAAAtcacagacctgagagagagagactcagctaCGTACAAGTTCAGATTATTAACAGATCAGGAAGGAGGGAAATATTCTGgaagtcctggagtcactctgtctgtaacagCTCTGCAGGTGAAGATAACTTCTAAAACTTTGCAAAATTGGGtgacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacacAAAGTAAAGGAGGACACCTCCAGCCTGTACTCAGACTACTTTAGTGATGCAGACAgttactcctgtgctgtaaaagGCCACGAGGATCTCcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTAGTTATTATTCCATCACATCAACATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCTCAGACCCAGGGTATGCATGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACAGACAACTTTGAATGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagACctgcaggtgaaggtgactcCTGGCACAGTGACAGAAGGATCATGGGTTATACTGACgtgtagcaccacctgtactctgactgacaaccccaaccccacctacatctggtacaagaatGGAGAAGAGCTATTTTCTGACTCCTCTCCCGAGTATCAATACTCAGTCAGTAGAGGAGGTTCTGACAACTACTCCTGTGCCTTAAGAGGCCATGACAAACTTAGCTCTCCTGAAGTCACAGTGGATACTTCTTCTCTGAACTGCTTGAGTGTGACCTACACCAGTATAAGCATCTGTTCCTTGATACCATCCGTGGACCTGCCTTGCACTGCCATATATCCCACAGACctgcaggtgaaggtgactcCTGACACAAAGGCAGGGAAGAggacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctgggACAGGAACGGACAGTGTCTTGCTTGGCTCACTTCCCAACAACACTCTGTCTGGAGTTCTGAAACAGAGAGTTACTCCTGTGCTGTTAAAGGCCATGAGGATCTCCGctctcctgcagtgtgtgttCAGGGTCACAACTGCTGGAGGGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGCTCCACAGTGGACATATCCTGCTCTTACACTCATCCCACTAGTTATATAGAACAAGGTTCATTCTGGTTTACACAGAAAGACCCTGTAGATGTCAGGTCATATCCAGAGTATGCAGGtcgtgtggagtacaatagagagAACCACCACACCATGACAATAACACACCTGACAGAGAAGGACTCGGCTGAATACAAATTCAGATTAATAACAACAGATGAGGGGAGATTTTCTGTCCTTCCTGGTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGtgtcagagggggagagagtcacaCTGAGATGTAGAACCCAATGTACAGTCGGTCTCAACCCCAactacatctggtacaagaacggacaaAGTCTGACCAACCCAATCACCAGTTATAACAGCCTGATCCTAGACCCAGTCACCAGTTATAACAGCCTGATCCTAGACCCAGTCAGCAGTGAGGATGCAGGGAACTACTCCTGTGCTGTAGAAGGCTTAGAGAGAATCCTCTCTCCAGAAGAGACTCTCACTGTCAGATATGGCCCAAAGAACACCTCAGtttcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccaacccacctgTGCAGAGTTACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGACTGGGAATAAATATGGACGTCTCAACTCTTCTTCTGTGTCTGTGGACGTTCAGTACGGCCCAAACTTAGCCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCATctctgaggacagaggagaatatTACTGTGAGGCCCAGAATAGAAGAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGGAAACAAATATCAGTTCTGACTGCAGCTGTAGGAATCATTGTTGTTGTTCTGGttctcatcctctgtctctctggactCATGTGGTTCAGGAAGAAGAACTCCACATCCACCTCCAACACAAGAGACACAGCAGATGATGGACAGGGAGACACTAGTCCAGTGTATGACAATGTCTCAAACATGGCCATGACCCCTACTGCAGCACAGACAGAGTCCACATACGACCAGGATGATGTTCACTACGCCAGCGTCCACTTCTCTCACTCCAAAAACCAGGAAGTGCCTCTGTACTCCACCGTCCAGCTGCATCAACCACAGAAACAGGACCAAGATGACCAATACGCTGCTGTGAAATTCAACCTCCCCTGTTCTGCCACCCAaccAGCAGCAGCACAAGCAGCTGAGGTGGATGCCTCTGAGATCTACAGTACagtcaacaaacccagaaccaagaagacttgaacataacaaacccagaaccaagaagacctgaacacaaaGGCCCAGAACCACAAACCCAGAACCAGGAAGAACTGAACACAACAatcccagaaccaagaagacctgaacacaacaaacccagaaccaagaatacctgaacacaacaaacccagaaccaagaagacctgaacacaaaGGCCCAGAACCACAAACCCAGAACCAGGAAGAACTGAACACAACAaaaccagaaccaagaagacctgaacacaacaaacccagaaccaagaagacatGAACACAAAGGCCCAGAACCACAAACCCAGAACCAGGAAGAACTGAACACAACAAAACCAGAACCAAtaagacctgaacacaacaaacccagaaacaagaagacctgaacacaacaaacccagaaccaagaagacatGAACACAAAGGCCCAGAACCACAAACCCAGAACCAGGAAGAACTGAACACAACAaaaccagaaccaagaagacctgaacacaacaaacccagaaacaAGAAGACATGAACACAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1300206 lncRNA downstream 11390 7327649 ~ 7432227 (-) True G1140410
TU1300171 lncRNA downstream 11814 7429962 ~ 7431803 (-) True G1140386
TU1300240 lncRNA downstream 24818 7418421 ~ 7418799 (-) True LOC118938520
TU1300157 lncRNA downstream 74731 7322699 ~ 7368886 (-) True G1140372
TU1300172 lncRNA downstream 90819 7340910 ~ 7352798 (-) True G1140387
TU1300133 lncRNA upstream 21398 7490185 ~ 7504699 (-) False LOC110493310
TU1300263 lncRNA upstream 30415 7499202 ~ 7681666 (-) True G1140457
TU1300264 lncRNA upstream 40446 7509233 ~ 7510495 (-) True G1140458
TU1300267 lncRNA upstream 46502 7515289 ~ 7646844 (-) True G1140461
TU1300155 lncRNA upstream 77193 7545980 ~ 7546571 (-) True LOC118938179
XR_005035432.1 mRNA downstream 7515 7434486 ~ 7436102 (-) True LOC118938180
XM_036942565.1 mRNA downstream 20590 7413426 ~ 7423027 (-) False LOC118938520
XM_036940079.1 mRNA downstream 39859 7316314 ~ 7403758 (-) True LOC110519431
XR_005035433.1 mRNA downstream 101937 7341076 ~ 7341680 (-) True LOC118938181
XM_036940080.1 mRNA downstream 152784 7284716 ~ 7290833 (-) True LOC110485501
XM_036940081.1 mRNA upstream 31581 7500368 ~ 7534632 (-) False LOC110493310
XM_036940091.1 mRNA upstream 61276 7530063 ~ 7564833 (-) True LOC118938177
XR_005035431.1 mRNA upstream 77119 7545906 ~ 7546579 (-) False LOC118938179
XR_005035430.1 mRNA upstream 98160 7566947 ~ 7567941 (-) True LOC118938178
XM_036942567.1 mRNA upstream 109887 7578674 ~ 7654174 (-) False LOC118938521
TU1300105 other downstream 196967 7245712 ~ 7246650 (-) True G1140343
TU1300085 other downstream 251374 7190696 ~ 7192243 (-) True G1140323
TU1299913 other downstream 362162 6934590 ~ 7081455 (-) False LOC110513509
TU1300132 other upstream 33604 7502391 ~ 7504699 (-) True LOC110493310
TU1300151 other upstream 190910 7659697 ~ 7660321 (-) False G1140368
TU1300663 other upstream 590159 8058946 ~ 8066712 (-) True LOC110485610
TU1301574 other upstream 862348 8331135 ~ 8332518 (-) True G1141490
TU1301607 other upstream 957826 8426613 ~ 8452319 (-) True G1141517

Expression Profile