RNA id: XR_005035430.1



Basic Information


Item Value
RNA id XR_005035430.1
length 721
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118938178
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7566947 ~ 7567941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggctgctgtacagcttggtgatagcagctatcattcaacctggtggtcagtctttaggctgctgtacagcttggcgGACCGTAAAGGATGGAACATTTATCCTCCTATATTTGGGTTTCTGAGACGAAAACAGCTTCTGAATAATCAAAATATGTGTTTACAGTAATACAGATCTGTTCAATAAGagattgttgttgttgatgatgatgatgatgatgatgatgattacttTACTGTATCCATTAGGAAATAGATTTTGCATCATACAGCATGTCATCTGAAATAGACAGATGTAGACAGACATGCAACACatcagacacattacatacatagtGCAAtagacttacagacagacagtattcaCATAGACAACCATAtagcacaatacaacacaatatgaGCCTGGTTCATCTTCAGTAATGAGGCCCTGTACCCCATTTACAGTTTAAACTTCTATGTATCAGGTGGAGTTATTCACCAGCTATagagttgttgtttatgtttctaagactgcagggtgggagatgcaacaatgaccttgagaacagcaggaagtgtgttggtggtctttctctggtctgtagcagTGGTACTGGGTCAGGATGGCTGGAGTGTGACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCAACAGTGGAGCTGTCCTGCTCTTACACATATCCCAGTGGTACATTCAAAACAACCTTCTGGTTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1300277 lncRNA downstream 19821 7546739 ~ 7547126 (-) True G1140471
TU1300155 lncRNA downstream 20376 7545980 ~ 7546571 (-) True LOC118938179
TU1300264 lncRNA downstream 56452 7509233 ~ 7510495 (-) True G1140458
TU1300133 lncRNA downstream 62248 7490185 ~ 7504699 (-) False LOC110493310
TU1300251 lncRNA downstream 105844 7458227 ~ 7461103 (-) True G1140448
TU1300282 lncRNA upstream 1910 7569851 ~ 7570855 (-) True G1140473
TU1300296 lncRNA upstream 40623 7608564 ~ 7642221 (-) True G1140486
TU1300160 lncRNA upstream 80172 7648113 ~ 7697970 (-) True G1140375
TU1300170 lncRNA upstream 82043 7649984 ~ 7699845 (-) True LOC118938521
TU1300152 lncRNA upstream 91756 7659697 ~ 7730493 (-) True G1140368
XM_036940091.1 mRNA downstream 2114 7530063 ~ 7564833 (-) True LOC118938177
XR_005035431.1 mRNA downstream 20368 7545906 ~ 7546579 (-) False LOC118938179
XM_036940081.1 mRNA downstream 32315 7500368 ~ 7534632 (-) False LOC110493310
XM_036940074.1 mRNA downstream 70167 7443617 ~ 7496780 (-) True LOC118938174
XM_036940076.1 mRNA downstream 98160 7443617 ~ 7468787 (-) False LOC118938174
XM_036942567.1 mRNA upstream 10733 7578674 ~ 7654174 (-) False LOC118938521
XM_036942568.1 mRNA upstream 57211 7625152 ~ 7671859 (-) True LOC110494997
XM_036940086.1 mRNA upstream 104831 7672772 ~ 7678768 (-) False LOC118938175
XM_036940089.1 mRNA upstream 104831 7672772 ~ 7695705 (-) False LOC118938175
XM_036940082.1 mRNA upstream 104831 7672772 ~ 7696461 (-) False LOC118938175
TU1300132 other downstream 62248 7502391 ~ 7504699 (-) True LOC110493310
TU1300105 other downstream 320297 7245712 ~ 7246650 (-) True G1140343
TU1300085 other downstream 374704 7190696 ~ 7192243 (-) True G1140323
TU1300005 other downstream 524427 7038877 ~ 7042520 (-) True G1140269
TU1300151 other upstream 91756 7659697 ~ 7660321 (-) False G1140368
TU1300663 other upstream 491005 8058946 ~ 8066712 (-) True LOC110485610
TU1301574 other upstream 763194 8331135 ~ 8332518 (-) True G1141490
TU1301607 other upstream 858672 8426613 ~ 8452319 (-) True G1141517
TU1301677 other upstream 1023024 8590965 ~ 8592898 (-) True G1141579

Expression Profile