RNA id: XM_036942567.1


Basic Information

Item Value
RNA id XM_036942567.1
length 3172
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC118938521
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7578674 ~ 7699845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagattggttctcaattagaggcagctgtttatcgttgtctctgattgggaaccatatttaggcagccatcttctttgggtatttcgtgggttatcaTCTATGTCTATGTGATGGTGCATGTTAGCACTCAGTTTGTTTAGAGGTCgtcttgttagtttgtttagtgtactaCGTGTTTTTTTTGTCCGTTCATTAAAgtatgcattcacaccacgcagCATTTTGGTCTCCTCAATACAACGATCGTGACagacactttgtgaatatggACCCTGGACTGTTTTTAATGTATCAGGTGGAGTTATTCACCAGCTATAGATGTTACTGGGTCAGGTTGGCAGGAGTGTGACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCAACAGTAGAGCTGACCTGCTCTTATACATATCCCAGTGGCTATACAATCACAACAACCTTCTGGTTCACTAAAAATGATGCTGAGGGGAATCCTGTGACTCTGAGTGATGACCCAGACTACACAGGTcatgtgatgtactgtagcaaCAAGAAGAATGGCCACACCCTGACAATCAGAGATCTGAGAGAGTGTGACTCAGCTATGTACAAGTTCAGCTTTATAACAGATCAGACCGTAAGgaaatatagtggtgatcctgGAGTCATTCAGTCTGTCACAGAGTGTCCATCCTGACCCTaactgggacacacacaccactgaaaaTGAGGACCAGACACTCTGCCAGTAGTGACACGTtcacatctcctcagagagacgCTCAGCACACCGTATATCAGACCATCCAGGGGAGAaaaccaccacagaacctggagggaagagaaccaccacagaacctggagggaagagaaccaccacagaacctggagGGAAGAGAACCACCACTGAACCtagactgaagagaaccaccacagaacctggactgagagaaccatcacagaacatggactgaagagaaccaccataGAACATGGACTAAAGAGCTATGGCACCAAACCAAAGCCAGACCTTACACCTCTATTCTCTTACTAATATATTGTTATCATATCTTGAAGTTTCACCCAAGCtacaaaatgacacattggtttccCTTCCCTTTTAGCAGTCTATGAACATGGTGTGACACCAGTCCCTGCTTTGTTTTAGTTTCCCCTGACACTGTTTCCACTAGCTAACGTTTTAGCATtcgtggcacaaatcccattcgtCATGTGACTAATAAGAGGCATTTCTCGCACATCATTTAAAAATCaatcaaaagtttaaaaaaaatgcgtTGTGAAGCTCAAAGTCACTTCCagatgatttgaacatgatgTGAGAATGTTAATATGTGAAATCTTAACATCAGTCCcgtgacttgaatgggatttttGTAAATGTGGGAGTGTTCGACATTGCAGCCAACTTTATAGGCAAGTCgagatctacaaatcaccttgcatgaTGAATAACTACTCAATATTATTAATAGaccagtcagtcacaatttacccatgatacatcAGTTTTGATGTTCTCGAACACTATCTGAGTGACTGCGGAAGGAAGCCCTCTCTGCATAAGCTTCTTGGTCCCTGACATAGAGTTGGATAGAAGGTACATCTTGACATCTTTGTCATGATGTCTTCTGTGACAGAATGAGCAGCACCATTGAGGGCTATTTCCATATTAAAGTAGTTAATATCTTCAACTTCCATAAGTTTAATAACAGTCTTCATACCAACTGAAATGGTGTATTCAATGGCTtagtcatgctaaaacaggctttGAAGCAAGTACGCCCTCTACTCAACTCTATTGTCCCTGACTGCTTCAAAGTTGTGTCAGCCACAGACTTCAAACCTCCAACCACACACTCATTGTCTATTTATATAGACTTCCAGTAAGCTAACTTACAACACATCTCCCCTTCACTCTACTGCAGGGTGGGAGATGTAACAATGGCCTTGAGAACAGCAGGAAGTGTGTTGgtggtctttctctggtctgtgaCAGTGGTACTGGGTCAGAATGGCTGGAGTGTTACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCATCAGTGGATCTGTTCTGCTCTTACACATATCCCAGAGGTACAGTCACAACAACACTCTGGTTCACTAAAATGGAGGCTGGTAAAGAACCTAAAGATCTAGGTCAGAACCCAGAGTATGCAGGTCGTCTGGAGTATCATGGGGTTAAGAAGAAAGACTGCACCCTGACAAtcacagacctgagagagagagactcagctaCGTACAAGTTCAGATTATTAACAGATCAAGAAGGAGGGAAATATTCTGgaagtcctggagtcactctgtctgtaacagCTCTGCAGGTGAAGATAACTTCTAAAACTTTGCAAAATTGGGtgacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacacAAAGTAAAGGAGGACACCTCCAGCCTGTACTCAGACTACTTTAGTGATGCAGACAgttactcctgtgctgtaaaagGCCACGAGGATCTCcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTGTTGGTTATTATTCCACCACATCATCATTCTGGTTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACAAACAACTTTGACTGGGGTCATAGTTTCCCAGGAACAACTCTGTCTATCACAGGTctgcaggtgaagagtgTCCGTCCTGACTGTAACAGTGACACGTACACAGGTCTGAACATGAGGACCATGTCCCCTGACTATGACACTCTGGCAAGTGTCAATCCTGACCCTAACAGTGACCCCAACAGTGACATGTACACACCTCTGAACATGAAGACCAGGTCACCAGAGTATGACACCCTGGcaACACATGATGGCGACATTGAATCATTTAACCATGAGTGGCTCGGCCAGCGTCTCCTcaactcagtcctggggaccccaagGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1300282 lncRNA downstream 7819 7569851 ~ 7570855 (-) True G1140473
TU1300277 lncRNA downstream 31548 7546739 ~ 7547126 (-) True G1140471
TU1300155 lncRNA downstream 32103 7545980 ~ 7546571 (-) True LOC118938179
TU1300264 lncRNA downstream 68179 7509233 ~ 7510495 (-) True G1140458
TU1300133 lncRNA downstream 73975 7490185 ~ 7504699 (-) False LOC110493310
TU1300152 lncRNA upstream 5523 7659697 ~ 7730493 (-) True G1140368
TU1300308 lncRNA upstream 11537 7665711 ~ 7667999 (-) True G1140498
TU1300309 lncRNA upstream 11743 7665917 ~ 7672113 (-) True G1140499
TU1300315 lncRNA upstream 42373 7696547 ~ 7710867 (-) True G1140504
TU1300338 lncRNA upstream 96620 7750794 ~ 7751003 (-) True G1140526
XR_005035430.1 mRNA downstream 10733 7566947 ~ 7567941 (-) True LOC118938178
XM_036940091.1 mRNA downstream 13841 7530063 ~ 7564833 (-) True LOC118938177
XR_005035431.1 mRNA downstream 32095 7545906 ~ 7546579 (-) False LOC118938179
XM_036940081.1 mRNA downstream 44042 7500368 ~ 7534632 (-) False LOC110493310
XM_036940074.1 mRNA downstream 81894 7443617 ~ 7496780 (-) True LOC118938174
XM_036940086.1 mRNA upstream 18598 7672772 ~ 7678768 (-) False LOC118938175
XM_036940089.1 mRNA upstream 18598 7672772 ~ 7695705 (-) False LOC118938175
XM_036940082.1 mRNA upstream 18598 7672772 ~ 7696461 (-) False LOC118938175
XM_036940083.1 mRNA upstream 18598 7672772 ~ 7696461 (-) False LOC118938175
XM_036940084.1 mRNA upstream 18598 7672772 ~ 7698366 (-) False LOC118938175
TU1300132 other downstream 73975 7502391 ~ 7504699 (-) True LOC110493310
TU1300105 other downstream 332024 7245712 ~ 7246650 (-) True G1140343
TU1300085 other downstream 386431 7190696 ~ 7192243 (-) True G1140323
TU1300005 other downstream 536154 7038877 ~ 7042520 (-) True G1140269
TU1300151 other upstream 5523 7659697 ~ 7660321 (-) False G1140368
TU1300663 other upstream 404772 8058946 ~ 8066712 (-) True LOC110485610
TU1301574 other upstream 676961 8331135 ~ 8332518 (-) True G1141490
TU1301607 other upstream 772439 8426613 ~ 8452319 (-) True G1141517
TU1301677 other upstream 936791 8590965 ~ 8592898 (-) True G1141579

Expression Profile