RNA id: TU1300170


Basic Information

Item Value
RNA id TU1300170
length 2343
lncRNA type read_through
GC content 0.39
exon number 3
gene id LOC118938521
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7578674 ~ 7699845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAACCTCGGCTGAtagaaccaccacagaacctggactgaagagaaccaccacagaacctggactgaagagaaccaccacagaacatggaCTGAAGAAaaccaccacagaacatggaCTAAAGAGAACCATcacagaacATGGACTAAAGAGCTATGGCACCAAACCAAAGCCAGACCTTACACCTCTATTCTCTTACTAATATATTGTTATCATATCTTGAAGTTTCACCCAAGCtacaaaatgacacattggtttccCTTCCCTTTTAGCAGTCTATGAACATGGTGTGACACCAGTCCCTGCTTTGTTTTAGTTTCCCCTGACACTGTTTCCACTAGCTAACGTTTTAGCATtcgtggcacaaatcccattcgtCATGTGACTAATAAGAGGCATTTCTCGCACATCATTTAAAAATCaatcaaaagtttaaaaaaaatgcgtTGTGAAGCTCAAAGTCACTTCCagatgatttgaacatgatgTGAGAATGTTAATATGTGAAATCTTAACATCAGTCCcgtgacttgaatgggatttttGTAAATGTGGGAGTGTTCGACATTGCAGCCAACTTTATAGGCAAGTCgagatctacaaatcaccttgcatgaTGAATAACTACTCAATATTATTAATAGaccagtcagtcacaatttacccatgatacatcAGTTTTGATGTTCTCGAACACTATCTGAGTGACTGCGGAAGGAAGCCCTCTCTGCATAAGCTTCTTGGTCCCTGACATAGAGTTGGATAGAAGGTACATCTTGACATCTTTGTCATGATGTCTTCTGTGACAGAATGAGCAGCACCATTGAGGGCTATTTCCATATTAAAGTAGTTAATATCTTCAACTTCCATAAGTTTAATAACAGTCTTCATACCAACTGAAATGGTGTATTCAATGGCTtagtcatgctaaaacaggctttGAAGCAAGTACGCCCTCTACTCAACTCTATTGTCCCTGACTGCTTCAAAGTTGTGTCAGCCACAGACTTCAAACCTCCAACCACACACTCATTGTCTATTTATATAGACTTCCAGTAAGCTAACTTACAACACATCTCCCCTTCACTCTGTAAGTATGCTTGACTATATcttaaaatatgtttattttatcaTTTGTTTGTTTCCATGAACTTCTGTATCCTGTTATGAGCATGGCGATGCTATtgtaatgtatgttttgtttttctgttaTTTACAGTATACTCTGTAGATGTATTTCTGCGTATATTAATCTGATACAGTATTGTACATGGGGTTACAGATATAATACTTTAGCATGGTATTTTAAGGACTCTGACAGCAATAGATTGTTGTGGAGACTTGTTTGAAAATAGCCTAAAGTAAGATTGAGAGTAACAGAGATTAGGTGTATGCTTCGTAAGAGCTTTAGGAGTaatattaacatgagacacagtgatggtgggttgtgtttaggagtagtatcaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagtcacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagtcacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacagtgatggtgggttgtgtttaggagtagtatcaacatgagacacagtgatggtgggttgtgtttaggagtagtatcaacatgagacacagtgatggtgggttgtgtttaggagtcgTATAAAcctgagacacagtgatggtgggtgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatagtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacataaGACACAGTGATggagggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtattaacatgagacacagtgatggtgggttgtgtttaggagtagtatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1300267 lncRNA downstream 3140 7515289 ~ 7646844 (-) True G1140461
TU1300296 lncRNA downstream 7763 7608564 ~ 7642221 (-) True G1140486
TU1300236 lncRNA downstream 26984 7407978 ~ 7623000 (-) True G1140436
TU1300282 lncRNA downstream 79129 7569851 ~ 7570855 (-) True G1140473
TU1300277 lncRNA downstream 102858 7546739 ~ 7547126 (-) True G1140471
TU1300338 lncRNA upstream 50949 7750794 ~ 7751003 (-) True G1140526
TU1300351 lncRNA upstream 57092 7756937 ~ 7761076 (-) True G1140531
TU1300392 lncRNA upstream 129278 7829123 ~ 7829555 (-) True G1140558
TU1300393 lncRNA upstream 133526 7833371 ~ 7833723 (-) True G1140559
TU1300394 lncRNA upstream 136631 7836476 ~ 7836694 (-) True G1140560
XR_005035430.1 mRNA downstream 82043 7566947 ~ 7567941 (-) True LOC118938178
XM_036940091.1 mRNA downstream 85151 7530063 ~ 7564833 (-) True LOC118938177
XR_005035431.1 mRNA downstream 103405 7545906 ~ 7546579 (-) False LOC118938179
XM_036940081.1 mRNA downstream 115352 7500368 ~ 7534632 (-) False LOC110493310
XM_036940074.1 mRNA downstream 153204 7443617 ~ 7496780 (-) True LOC118938174
XM_036942569.1 mRNA upstream 14528 7714373 ~ 7733873 (-) True LOC110493317
XM_036942570.1 mRNA upstream 34200 7734045 ~ 7736476 (-) True LOC118938522
XM_036940094.1 mRNA upstream 226088 7925933 ~ 8006473 (-) True LOC118938183
XM_036940100.1 mRNA upstream 359096 8058941 ~ 8080347 (-) False LOC110485610
XM_036940101.1 mRNA upstream 398664 8098509 ~ 8119143 (-) True LOC110518530
TU1300132 other downstream 145285 7502391 ~ 7504699 (-) True LOC110493310
TU1300105 other downstream 403334 7245712 ~ 7246650 (-) True G1140343
TU1300085 other downstream 457741 7190696 ~ 7192243 (-) True G1140323
TU1300005 other downstream 607464 7038877 ~ 7042520 (-) True G1140269
TU1300663 other upstream 359101 8058946 ~ 8066712 (-) True LOC110485610
TU1301574 other upstream 631290 8331135 ~ 8332518 (-) True G1141490
TU1301607 other upstream 726768 8426613 ~ 8452319 (-) True G1141517
TU1301677 other upstream 891120 8590965 ~ 8592898 (-) True G1141579
TU1301694 other upstream 959714 8659559 ~ 8667096 (-) True ncf4

Expression Profile