RNA id: XM_036942322.1


Basic Information

Item Value
RNA id XM_036942322.1
length 1832
RNA type mRNA
GC content 0.56
exon number 13
gene id LOC110485344
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10697026 ~ 10717367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGCCCAGTTGACTGGTGATTCAGAGTGGAGATCGACGGGAAGCCGCCGGTAACGCTTAAATCTCCTCCCCGGTTGGATTCAGAGCTCGCTGCGGGTGCTGAATGTGCTATTTTCGTATGTCTAGACTTCTCAGGACTGAGAAGTGCCCTATGCTGATCATCACTGCTCGGCTACTCCCCCTCTTAACTGTACCCTTCACCCACCAGAGGATTCTAAGGACAGTTGTTGCCTACAGGGGACTGAGAACCATGGAGCCCCTCAGGGCCCCTCAGGATCCACAAGTTAACACCACCCTGTCTGGGGTAGACACCAAGCCTCAGCCCCCTACTTCTGGAGCCCCAATGGAGGGCTTGAACCCAAGTCCAGCTGCCTCAACACCTGACCAGGAGATGCCCCCGACAACAGGGTTGTTGCCAGGGGAGACAGTTGTCAGGGAGGGCAAGGCAGCCATATTGTTTCCCAGTGCCAACGAGGTGTTTTACAACCCTGTGCAGGAGTTCAACAGAGATCTGACGTGTGCGGTGGTTACAGAGTTTGCCCGGGAGCAGATGGCCCGGAGGGGGGTGAAGGTGGTAGTgccaggggagaaggagagggtggtGGTCAATCTAGCTGACgagaagaaagaggagacagagatgcagacaggggaggaaggaggagaggagccagtCGTAACTGCTTCAGTGGGGGAGTGCTGTAAGAATGGTCTGCGTGTGTTGGAGGGTCTGGCAGCGTCTGGCCTACGCTCTGTGAGGTTTGCTCTGGAGGTGCCTGGTCTACGTAGCGTCACGGCTAACGACTTCTCAGCCAAGGCTGCTGCCCTCATCGCCCGCAATGCCCAGCACAACGGAGTCACACACCTACTGCAGGCCAGCCAGAGAGATGCCAGCATGCTGATGTATGAGATGCGTGGGAAGAAGGACCGATATGATGTCATAGACCTGGACCCCTACGGAAGCCCCGCCCCTTTCCTGGATGCCGCCGTCCAGGCTGTCGGTGAAGGAGgtcTGTTGTGTGTGACGTGTACTGACATGGCTGTGATGGCTGGTAACAGTGGGGAGACCTGCTACAGCAAATACGGCTCTGTCTCCATCAAAGCCAAGTACTGTCATGAGATGgCTCTGCGTATCATCCTACACAGTCTGGACCAGAGAGCTGGTGTGTACCAACGGTACATCCACCCCctgctctgtgtcagtgtggaCTTCTACATACGAGTGTATGTCAGGGTACACACTGGACAGGCCATGGTCAAAAACTCAGCaagTAAACAAGCGTTGGTGTATAACTGTGTTGGCTGTGGCTCGTTCCACTTACAACGACTGGGCAAGAGGACGACTCAGGGAAACCATATAAAGTACTCTGCAGCCACTGGACCGCCGGTCGGAGCAGAGTGTGAACACTGTGGACACAGACACcagctGGGTGGTCCTATCTGGGGTGAGGCCCTCCATGACGTGAGCTTCGTTCAGAAGGTTCTATCTGCCGTCTCTGGGAACCCGTCCCGCTTTGGAACCGCCCGCCGCATAGAGGGCATGCTCAGCATGGTCACAGAGGAGCTGGAGGATGTGCCTCTATACTACACAGTGGACAACCTGAGCAGCACTGTACACTGCAGCACTCCCCCTCTGCTCCAATTCAGgtcGGCTCTGCTTCATGCAGGCCAcagggtgtccttgtctcatgcCTGTAAGAATGCTCTAAAGACGGACGCTCCTCCCAGGGTCCTCTGGGACGTCATGCGATGCTGGGAAAAGTCCCATTCCGGGTGTAGATATGACGGTATGTGGTGGTTATGTTGTATCCTGTAGGAAAAGTCCCATTCA

Function

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00555 TRMT1, trm1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1303266 lncRNA downstream 13601 10688162 ~ 10689190 (-) True G1142801
TU1303265 lncRNA downstream 20630 10680396 ~ 10682161 (-) True G1142800
TU1303259 lncRNA downstream 27250 10673301 ~ 10675541 (-) True G1142797
TU1303261 lncRNA downstream 29811 10671988 ~ 10672980 (-) False G1142798
TU1302923 lncRNA upstream 14739 10732106 ~ 10732517 (-) True G1142513
TU1302920 lncRNA upstream 15738 10733105 ~ 10733554 (-) True G1142510
TU1302912 lncRNA upstream 16545 10733912 ~ 10738270 (-) True G1142502
TU1302910 lncRNA upstream 22135 10739502 ~ 10740062 (-) True G1142500
TU1302904 lncRNA upstream 23438 10740805 ~ 10741991 (-) True LOC110487189
XM_036942342.1 mRNA downstream 45459 10634149 ~ 10657332 (-) False LOC110487259
XM_036942304.1 mRNA downstream 380608 10313723 ~ 10322183 (-) True LOC110516362
XM_036940200.1 mRNA downstream 600236 10097947 ~ 10102555 (-) False lgals2b
XR_005035450.1 mRNA downstream 628170 10015869 ~ 10074621 (-) True LOC118938203
XM_036940192.1 mRNA downstream 1003319 9695450 ~ 9699472 (-) True LOC118938202
XM_036942353.1 mRNA upstream 23438 10740805 ~ 10762141 (-) False LOC110487189
XM_036942352.1 mRNA upstream 23438 10740805 ~ 10762367 (-) False LOC110487189
XM_036942587.1 mRNA upstream 62974 10780341 ~ 10913542 (-) False LOC110494931
XM_036942357.1 mRNA upstream 264315 10981682 ~ 11101213 (-) True LOC118938429
XM_036942360.1 mRNA upstream 390179 11107546 ~ 11110630 (-) True LOC118938431
TU1303216 other downstream 136326 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 403424 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 600273 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 720525 9980348 ~ 9982266 (-) True G1142121
TU1302244 other downstream 1033609 9667245 ~ 9669182 (-) True G1141973
TU1302932 other upstream 103057 10820424 ~ 10822367 (-) True LOC110494931
TU1303981 other upstream 440519 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 563695 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 710323 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 738207 11455574 ~ 11494340 (-) True LOC118938427

Expression Profile