RNA id: XM_036942353.1


Basic Information

Item Value
RNA id XM_036942353.1
length 3063
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110487189
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10740805 ~ 10762367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGACGTTTGGGGTAGTTTAGTTTGATAACGTGGCGTTTAGAAGTTATCAACCTGTCTGTGGCAAGCTAATTTGCTAGCTAATGCTACAGGCTAGATTCGCAATCAACGTGCGGGTTTATGTTGACATTAAGGGAGGTCCAGAAGGCGTTGTCTCGTGCCAGGAGCCTTTACGAACGCTGGGAGGAGCTTCTGGAGGAGGGCACTCAgGTGAGCAAAGATGAGCTGGACTGGAGCACCAATGAACTGAGGAACTGTCTCAGAGCCATAGACTGGGACCTGGAGGACCTGAGTGAAACCATCAGTATCGTTGAGTCCAACCCGGGGAAGTTCCGTCTGGGGGAGAATGAgctgcaggagaggagagactttGTGGAGCGAACACGGCAGGCCGTACAGgaGATGAAGGATCAACTCTCCAGTCCCTCTGTTGTGGCCCAGGCAGAGAAGAAGAACAGACAGGCTCTGATGGGTGCGTCTGGGCAGGACAGGTCTGATGGTCTGGAGTCTCACCTGGTGTCAACCAACTCCAGATACATCCAGGATCAACAGGAACAGCAGcagTTGATCATGCAGGACCAGGATGAGCAGTTGGAGCTGGTGACCGGAAGCATCAGAGTACTGAAAGACATGTCAGGACGCATCGGAGATGAACTAGACCAGCAGGCtgtTATGCTAGGAGAGTTTGGAGAGGAGATGGACCAGACAGGTTCTAGGATGGACTCTGTCCTCAAGAAGATGGAGAAAGTCTCCCACATGACCAGCagtAGGAGACAGTGGTGTGCCATCGGAGTACTGGTGGTCATCATGGTAGTTgttctcatcctcttcttcaccCTCTGAGTATGGACCTCTCTTCACTACACGACTCTACCGCACTCACCCACTCCTTCCTGGGGATGAACCATGAAATGGATGAAGGGATGAATGGAGGCATCGATATAGGAAACAGGGAATCCAATCCAACCCTCGTCTTTCCTTTGTCATAGATTATTCAGAGACTCAATTCTATCTTTCTAGTACTCATCActttgtccctgtctctctctctctgggtatctGTCTATCCCTGTTTCCCTCCTATTTCCCACCTCTCTCACCACCCATATCAGAGGAGTGAACAGCAGTGAGATGACggttacattatattatatattcaGGCAAAGCTAAGATGTCTCTCTCGTGTGAATGATGGTACAGacttgggaggagggagggagatgtcaATGTTGCCTTATCTATTTTTATACGTCTATGAGATGATCTTcatcccaaatagaaccctattccctacatagtgcactacttaggacTGGTGAAATCACCTAGATCAGTTGTTAGGTCAACTTCTACCTTGTTCCAAATCATCTGGCCCGTTGGAATAGCTTTATCATAGGAGGTAGAAGTTACCCCTAGACATGTTTTATGTAGTTTCCCCTTCTGGATAAAGGATTTGAGGCTAGTgatctgatcccagatctgtggaGACGGGAAAGGTCAAGCCTATGGTGATAGCTTTACCATAGTAACAGTTGGAGTTCTGGGTTGCTGGGCAGGAAATTAGCAGCACAAGTTAATTTGAAGCTCTTTCGCCCCCTAGCGGACATTTATGGCCATGTCCACATTTCATAATGTGAGATACCACTGACTGATGTGATGGCCCGTTTTCAGAGTTTTTGGGggagtgctgatataggatcagttttgcctcctactctgagatgcttgatgAATATGACCCTGAGGTGCATTTTATACTATTGTGTAAATAAATCTAAACGTAATGCTTGACATTGTGGGATGTGGACTTATTTCTCCTTCCTCAAGACACCTTTCCTGCCTGGTGTCTTTTGGTTGGTACTGCCACCTTGGTACCCGTTTGTGTGGGATGGTTGGTTTAATCTGTTCATTTGCGATTGGTTGTGTAtttagggctcctgagtggcgcaggggttgaaggcactgcattgcagtgctagaggtgtcactatagaccctggttcgatttcaggctgtatcgtaaccggccgtgattgcgagtcccatagggcggcacaattggcccagcgtcatcgtaaataagaatttgttaactgacttgcctagttaaatgaattTACATTGTACTGATTGGAAAAATACTTGAGTGATTCATTCTCTGTGATCAGTTTGAAAGGTTGTAGCTCTGTTCTACTGAAAACTGTCTACTGGTTTCCATCTATCACATTGTCCAATGATTTAGGTTTATTAGGAACTCTCTCAGGGTGCATTGACTGGTGCAATAGGCCCTGTTCTAATAGCTCCTTCCTTCACCTATTCCTCAAGGAAAtcaccactgatctaacacgaTCTGGTTGGTCAGAGGACGCAGTGGAAAGTAGCCTAAATTCCACCTATCCAACTTTGTCAGATCAGTGATTGAGCACAAACAAGGTTGCATTAGAAGGGTTTGAACAGGGCCTGATTCTTCCAAGTCAAAAAGGAAAAGGTTAGCTAGCATTTATCCACTTCAATGATCAGTGTTTCTCCTGCTATGGAAATGCCTAACCATTCAAGAGTTATTGCTAGATGCCTTGTGGGAAGAATGTATTGTGTAAATAGCTTACAAAATGGCCACCTTCCTGCTTTTGTTGGTTTCATTGAATTAGTGACCTCACTCGTCTCTTTATTTCAAGTTCTACTGTTGCTATTCATTTGTAACATTCAGTGTAATGTTTTCCAAAGTCTATGAATTATATTTGCCTCTTAACCCAAACAACATGTGCTGGAGTTGTAGGTCACCCTGTCTATGAATGAACATAGGAGTCATTTCTAATGCTTTGCCGTACCATCAGCCTGAAACATCAAGTAAACACTCCTTTTTTTGTACGATAAATGTTTTGCCGTACCATCAGCCTGAAACATCAAGTAAACACTCCTTTTTTTGTACGATAAATGTTTTGCCGTACCATCAGCCTGAAACATCAAGTAAACACTCCTTTTTTTGTACGATAAATGTTTTGCCGTCATTGTAGTTTCTTGATGAAAATGAACTATTGTTCTTAATAAATCATATGCTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1302910 lncRNA downstream 743 10739502 ~ 10740062 (-) True G1142500
TU1302912 lncRNA downstream 2535 10733912 ~ 10738270 (-) True G1142502
TU1302920 lncRNA downstream 7251 10733105 ~ 10733554 (-) True G1142510
TU1302923 lncRNA downstream 8288 10732106 ~ 10732517 (-) True G1142513
TU1303269 lncRNA downstream 24044 10715842 ~ 10716761 (-) True G1142804
TU1302925 lncRNA upstream 51882 10814023 ~ 10843369 (-) True G1142515
TU1302945 lncRNA upstream 63469 10825610 ~ 10829252 (-) True G1142535
TU1303303 lncRNA upstream 115857 10877998 ~ 10878203 (-) True G1142838
TU1303304 lncRNA upstream 116703 10878844 ~ 10879108 (-) True G1142839
TU1303322 lncRNA upstream 136546 10898687 ~ 10899346 (-) True G1142849
XM_036942320.1 mRNA downstream 23438 10697026 ~ 10717367 (-) False LOC110485344
XM_036942322.1 mRNA downstream 23438 10702791 ~ 10717367 (-) True LOC110485344
XM_036942321.1 mRNA downstream 28442 10697026 ~ 10712363 (-) False LOC110485344
XM_036942342.1 mRNA downstream 83473 10634149 ~ 10657332 (-) False LOC110487259
XM_036942304.1 mRNA downstream 418622 10313723 ~ 10322183 (-) True LOC110516362
XM_036942587.1 mRNA upstream 18200 10780341 ~ 10913542 (-) False LOC110494931
XM_036942357.1 mRNA upstream 219541 10981682 ~ 11101213 (-) True LOC118938429
XM_036942360.1 mRNA upstream 345405 11107546 ~ 11110630 (-) True LOC118938431
XM_036942359.1 mRNA upstream 352994 11115135 ~ 11116092 (-) True LOC110485570
XR_005035707.1 mRNA upstream 470344 11232485 ~ 11233755 (-) False LOC118938432
TU1303216 other downstream 174340 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 441438 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 638287 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 758539 9980348 ~ 9982266 (-) True G1142121
TU1302244 other downstream 1071623 9667245 ~ 9669182 (-) True G1141973
TU1302932 other upstream 58283 10820424 ~ 10822367 (-) True LOC110494931
TU1303981 other upstream 395745 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 518921 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 665549 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 693433 11455574 ~ 11494340 (-) True LOC118938427

Expression Profile