RNA id: XM_036942587.1


Basic Information

Item Value
RNA id XM_036942587.1
length 9837
RNA type mRNA
GC content 0.52
exon number 51
gene id LOC110494931
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10780341 ~ 10913542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTAACTCCAGCCTTACTCCTTTTGAATGGATGATTTTGGCAACCATCATAGCTAACTGTATCGTCCTGGCTCTGGAACAGCATTTACCTGAGAATGACAAAACTCCTCTTTCTGAGAGACTGGATGATACAGAGCCCTACTTCATAGCCATCTTCTGTTTTGAGTCAGGTATAAAGATTCTGGCTCTGGGCTTTGCCCTCCATAAGGGCTCCTACCTGAGGAATGGATGGAACGCTATGGACTTTGTAGTAGTGCTCACTGGtATCTTGTCGGCGGTTGGCTCCGAATTTGACCTGCGGACACTGAGAGCAGTCAGGGTTCTGCGACCACTTAAGTTGGTGTCAGGGATTCCCAGCCTGCAGGTGGTACTCAAGTCCATCATGAAGGCTATGATCCCCCTGCTGCAGATCGGACTGCTTCTCTTTGTGGCCATTCTGATGTTCGCCATCATCGGCCTTGAGTTCTACATGGGAAAGTTCCACACCACCTGTTTCGACATCGCCACTGATGAGATTTATGATGAGTTGCCATGCGGTACAGAGTTACCGTCCAGATTGTGTCCTAATGGGACCACGTGTAAAGGCTATTGGCTGGGGCCCAACTATGGGATCACCCAATTCGACAACATTCTCTTTGCTGTCCTCACTGTATTCCAATGTATCACCATGGAGGGTTGGACCGATATGTTATACTATaGTAATAATGTAGAGGGAAGTGCCTGGAACTGGATGTACTACATCCCCCTCATCATCATCGGGTCCTTCTTCATGTTAAATCTGGTGCTGGGCGTCCTCTCAGGAGAGTTtgccaaagagagagagcgagtagaGAACCGTGCAGAGTTCCTCAAATTGAGACGCCAGCAGCAAATAGAGAGAGAGCTAAACGGATATCTAGAATGGATCTGTAAAGCAGAGGAGGTCCTTCTGAATGAGGATGGTACCATTTTTACCGGTACCGTCAAGACCAAGAACAAGAAAGAGCTGCTGAATCCAGAAGAGGGGGAAGATGGTGGAGCTAATGGAGACCCGTTTGGCCGAGGTGGTCTACAGGATGGGTCCAACTACAATAGGAACGAGCGGCGGATCCGGTTCTTCATCCGTAAGATGGTGAAGACTCAGGCCTTCTACTGGACCGTCCTGAGTCTGGTGGGCCTCAACACCATGTGTGTGGCGGTGGTACACTATGAACAACCTGAGATCCTCTCCGACTTTCTCTtctatgCAGAGTTTATATTCCTGGGTCTGTTCATGTCAGAGATGTGTATTAAGATGTATGGCTTGGGGACTAGGCCCTACTTCAACTCCTCCTTCAACTGCTTTGACTGTGTTgtgatCGTGGGCAGTATATTTGAGGTGATATACGCGGTCATTAAGCCAGGGACATCGTTTGGCATCAGTGTGTTAAGAGCCCTCCGACTGCTCAGGATCTTCAAAGTCACCAAgtactGGGCCCCTCTACGTAACTTGGTGGTATCATTACTCAACTCTATGAAGTCCATCATCAGTttgctcttcctcctcttcctcttcattgTCGTCTTTGCCCTTTTGGGCATGCAGCTCTTCGGTGGacagTTCAACTTTGAAGGTGGCACGCCGGCCACCAACTTTGACACCTTTCCTGCAGCTATAATGACAGTATTTCAGaTCCTGACGGGTGAAGACTGGAACATGGTGATGTATGATGGGATCAAGTCTCAGGGAGGAGTAAACAGCGGAATGGCCTACTCCGTCTTCTTCATAGTGCTCACACTCTTCGGCAACTACACCCTGCTGAATGTGTTCTTAGCTATCGCCGTGGACAATCTGGCCAATGCTCAGGAGTTGACCAAGgatgAGGAGGAGCAAGAAGAGGCAGCTAATGCCAAGACAACCCTGCAGAAGGCCAAGGAGGTGGCTGAAGTTAGTCCTCTGTCTGCCGCTAACCTCTCCATCGCTGCAGTGACAGTAACAAAAACTGAGCGTATCGATGCCACAGAGAATGTGCTTGACTGTAAGGAGCAGCAGAAGAATAATAAGGCTGGTGGTAAATCCGTGTGGGAACAGAGGACCAGTGAGATAAGGAGACAGAACCTGATGACCAGCAGAGAGGCCCTGTACAACGAGATGGACACGGAGGACTGGAAggtcaggggagagggggagggagaggtgtCGTACCCCCATCGTGCGGGGGACATGAAGACCCACCTGGACCGTCCGCTGGTGGTCAACCCCCAGGACAACCgcaacaacaataccaacaagACCCGGCCCGGAGAGCCCCCTCTAGACCCGCAGGACACCCTGGGCCAGCAGAGGGCTGAAGAATACATCAGACGCCAGGCCTGCTACCATCAGAGATACAGGGGGGGTGAACCAAGGGGAGGTAgtggcccagagagagaggcCCGTCTGGGGCACGGGGGGAGCAGATTGTCCCTGCAGACGCTGGAGGGTATTGAAGAAAGAAGGGAACATGGAAGGAGATGTAGGCataaagaagggaaggaggggaggagtgtGTCACCGCATTATAGCGAGGGAGGAGTgggggatgagaagaggaggcacaAAGGGGTAGTGGTAGGGGAGGGgggtgaggtagagggggaggggaggaggccGAGGCGTCATcggcatggagagaggagccgaCAGCATCGAGTTAGAAAAGACCACCACTGCAGTGGCCCCAACCTCTCCACCGCTCGGCCCATTCTCAGACAGGACAGTCAGTACAGGGAAGACCTAGACAACCTCCTCAACAACAGCAAACTACACGACCACACCCTCCACCCGCTGCCCCCAGACCACCCTGACCTTGTGAATAACCTCCTGAACCGCAGTGTGACAGCAGACACACACCACCATAGTATGGACAGTCTAATTCTGACCAGTATGGCCAAGCCGGCTCATACGGTCGTGGATATGATGCCTCCTGTCTATCCATATCCCTCCACCAATGCCATCCTGcaagTGAACAAGAATGCTAACACAGACCAGAAAAAGAAGgatgaggagaagaaggaggaagaggaggatgaagggggCGATGAAGATGGTCCCAAACCAATGCCCCCGTTCAGCTCCTGTTTCATACTGTCCACCACCAacccgttcCGTAGGTGCTGCCACTACATCCTGACCAGGAAGTACTTTGAGTTCAGTATCCTGTCTGTGATCGCAATGAGCAGCATCGCCCTGGCTGCAGAGGACCCTGTCTGGCCTGAGTCACCAAGCAACCAAGTGCTGAAATACTTTGACTATGTCTTCACGGGTGTCTTCACGTTTGAGATGTTGATCAAGATGGTGGTGCTAGGCCTGTTCTTACATCAGGGTTCATACTTCAGGGACCTGTGGAACATCCTGGACTTTATAGTGGTTAGTGGTGCTCTGGTGGCCTTCGCCTTCACGAGCTTCGCAAAGGGGAGTGGCAAAGGGAAAGATATCAGCACTATCAAGTCTCTGAGAGTACTGAGGGTACTACGACCTCTCAAGACCATCAAACGACTCCCCAAGCTAAAGgCTGTGTTTGACTGTGTGGTGAACTCTCTGAAGAACGTCCTGAACATCCTCATCGTCTACATGCTCTTCATGTTTATATTTGCTGTGGTGGCTGTGCAGCTGTTCAAAGGCAGATTCTTCTACTGCACTGACGAGTCCAAGGAGTTTGAGCGCGATTGCAGGGGAGAGTTTTTGGTGTACGAACGGAATGAAGTAAAAGCTGAGAAGCGGGAGTGGAAGAAGTACGATTTCCACTACGACAACGTGCCTTGGGCCCTGCTCACCCTCTTCACTGTGTCCACTGGAGAGGGCTGGCCGcaGGTGTTAAAGCATTCGGTAGATGCGACCTATGAGAATCAGGGTCCCAGTCCGGGCTACCGGATGGAGATGTCCATCTTTTACGTGGTGTACTTCGTTGTCTTCCCCTTCTTCTTCGTCAATATCTTTGTTGCtctcatcatcatcaccttccAAGAACAGGGGGATAAGATGATGGAGGACTACAGTCTGGAAAAGAAtgagAGAGGATGTATAGACTTTGCCATAAACGCCAAGCCCCTGACCCGCCACATGCCCAAGAACAAGCAGAGCTTCCAGTTCCGGATGTGGTCGTTTGTGGTGTCCCCACCGTTCGAGTACAGCATCATGGGTCTGATCGCACTCAATACTATAGTCCTCATGATGAAGtaTAATGGGGCGTCTGACACCTATGATAAAGTCCTGAAGAACATCAACATCGTCTTCACTACCCTCTTCTTCATGGAGTGTATTCTCAAGATCATCGCCTTCGGGGTTTTGAATTATTTTAAAGACGCTTGGAACATTTTTGATTTTGTCTCCGTGCTCGGAAGCTTCACTGATATCCTGGTGACAGAATTTTGGGAGAATAACTTCATCAACCTGAGTTTCCTTCGACTGTTCCGAGCGGCTCGTCTCGTCAAGCTACTGAGACAAGGAGAGACTATACGCATCCTGCTCTGGACTTTCGTCCAGTCAtttaagGCGCTGCCCTATGTGTGCCTCCTCATTGGCATGCTGTTCTTTATCTACGCCATCATTGGGATGCAGttgtTTGGTAATCTGGCACTGGGCGAGGACGAAGGCAGTGCCATCAAcgaaaacaacaacttcaggacTTTCATCATGGCACTCATGTTACTATTCAGGAGTGCGACAGGTGAGGCGTGGCATGACATCATGCTGTCGTGTCTGGGGGGTAAGAAGTGTGACCCAGACTCAGGGAACACAGAACCAGAGTGTGGCAGCACCTTCGCATACACATACTTCGTCTCCTTCATCTTCTTCTGTTCTTTCCTGatgctgAATCTGTTTGTGGCTGTCATCATGGATAACTTTGAGTACCTGACCAGAGACTCATCTATACTGGGTCCTCATCACCTGGACGAGTACGTCAGGATATGGGCCGAGTATGACCCCGCTGcctgCGGGCGCATACATTATAAGGATATGTACAGTTTATTGAGAGTAATCTCCCCTCCTCTGGGCTTGGGCAAGAAATGCCCTCATAGGGTGGCCTGCAAGAGGCTGCTGCGCATGGACTTGCCGGTTGCCGAGGACAACTCAGTGCATTTCAACTCCACCCTCATGGCTCTGATTCGGACAGCGCTCGATATCAAGATTGCCAAGGGAGGAGCTGACAAACATCAGATGGACGCTGAGCTAAGGAAAGAAATGATGGCCATTTGGCCCAACCTCTCTCAGAAGAACCTAGACCTGCTGGTCACACCACACAAGTCAGCCACAGACCTGACGGTGGGGAAGATCTACGCTGCCATGATGATCATGGAGTATTACAGACAGAGCAAGGCCAAGAAGCTCCAGGCCCTACGCGAGGAGCAGAACCGAACACCGTTAATGTTTCAGCGCATGGAGCCGCCCTCCCccgggggaggagaagggggaggagggggaggcccCGACGGGACGGGAGGAGGGATGCCAGGGGTCAACGGCCTCCCCGCCACCCAGCATGACCCCAACAGCATaccTCCAGAGGGTGGGATGACAGAGAGCCAGTCGTGGGTGACAGCTAAAGCTCAGGAGATGTTTAACAAGACGGGCAACTGGAGCCCAGAGAGACCCTACCCCGAccatctccatgacaacagacacAACCCCCAGACGCTAGAGATGAGAAAGATGGGGCGGGACGGGTACTCGGAAACTGAGCCCTGTCACCCAATGCGAATGGACAGGCATGGTCGGACCATCTCCATGCCCCGCCTCTCAGACGACAACCAAAGTGTACACGATGCTGCGCGGAGACGACACAGGCCTCGTGGACATAACCACCTCAGTACCATAACAGACACCAGCCCCATGCGTCGGTCCACTTCCTCTCTGGTCCACGGGCGTTCtggcagggagaggggggtgaggctGGATGACTACAGCCTGGAGAGggtagaaggagaggggaggcacGGTGGGGGAGCAGGAGGGGGACAACGcagggacaggagggacaggagCCACCGCACCTCTCAGAGGTCCCTTACCAGatacacagacgcagacacagGGTTGGGCACAGACCTGAGCACTACCACCCAGTCTGGAGAACTCCCCCCCAAAGAGCGTGAACGCGAACGCGGTCGAGCCAAAGACCGCAggcaccaccatcatcaccaccaccacggtGGCTCCATGGAGAAGGAGGGGCGCTTCGGGCCAGACAGACACGGGCCAGAGTTCACCCACAGACACCCCCACGACCGGGGGGACAGACACTGGTCCCGCTCTCCTAGTGAGGGGCCCGACGGACGGGGCCACAGACAGGGCAGTAGCTCGGTGAGCGGCAGCCCCGTCCCCTCCACGTCCGGTACCTCCACCCCCCGCCGCGGGCGCCGCCAGCTGCCCCAGACCCCCGCTGTGCCACGCCCCCACGTCACCTACTCCCCAGCCATACGACACCCCAAGCCCACCTACGGAGCAGGTCCCCCTGGACGACTCCGCTCCCCCTCCCCCCGACACTTCTCCCCCCCAGAGCACGACGGAGGGGGGTATCACCGCCCGCCATCGCGTCACGTTTCCCCGCTTGAGCACGGAGGGTCGAGGCACGGGTCTCCGAGATCGGCCCGACACCAGTCGGGGTCTCGTTCACCTCCGCCCCACCATGGGTCACCCCGGTCCCCCCGCCACGGGCGTTGGAGCGGTCCCCCTCCCGGGGATAGTCTGGAGAGCGAGGTTGGCCCATTCTATGAGCGTGACTGCGAGTACGAGCGCCAGCATGAGCCGCCCGCCTACGAGCAGAGCCTCAGCAACCCACATCCCCACGGCAACCCCCACCCGCACGGCAACCCACATCCGCACGGCAACCCGCACCCACGCTCCCCCAGGACTGCCCGGCACGGGGGCGGCGTGGGCCCACCACCTCCACTTGCTCCCACTCACCCCCGACGAGTCCCAAATGGTTACCGCTCGTCTTCGCCCTCCCCGCACCGGCGAGGGCCCCCACATCAACACCCCAATCCAGGGGGACCACCCCACCGGTCCCCCCCTCATCACCGGGTCCCCCATGGAGGCCCCAGAGGCCCCCGGAAGGGACTGCACGAACCCTACAGCGAGACGGACGAGGACGACTGGTGCTAGCACAGCGAAGGAACAGAAgaacgagggaggagaggaagagaggaaaaggagggaggagaggagtctcTCCGTCTCCCCCATCCTCTGTTCTTCGTTATGCAGACTTGAATGAAGGGTAAAGGGATGCAGAAGGGggtgaggaaaggaaaggaggagaggagaatttGGGAgaagtctctccatctctctacctccacccctgAGACTCAGACTTGGATGGAatgatgagggatggagggatggttaGAGGAGAAGAGGcacactgtgtgggtgtgtgagactCTAAACTCAGAGCagacatgacagagagagacagctataAGGCAGAACTAcgcacctctcctcttctcctctgtctcaacTACCATACCCAGAGTTCTCAGCGTGCCCAGGGGGGAGTAGACCGAGGGATGGTGGAGAGGTGCTGACGGAGGTGTGGAGAGGGAAGAAAGAACAAAAGAATGAAAGGAAGGGAGGAGCATGTATATTAAGTTACAAGTGGCCAATGAATGGTAAATAAAAGCCCCTCTCCCAGACTGTTTAGGGGATAGGTGGGTTAGTTAAGTTAAGCTAAACCTGGGTGCTCTTGCTGTTCTGTCATTCTATTCTACTAGCCTGATAAGTGTTAGGAGCTAACAGCtaaacgctagctagctaacactgctCTTGGTCTAACCTAGACGgacatgtttaaaaaaacaacaacgaaaACCCATGCCAGGACCCCCTATCCTTATACACGCCAAGCTATGCCTCCAGAAAAATCTAACTTGAAGACTAAagaacagaaaacaaaaacaaactttGAAAAAAAAGAGGAGAAAAAAAGGGAGAACAACCACTTTAACTTAAACTTTCCTGAAAGGGACCGGACTAGAACCAGGAAGCTCCGCCTCTACTGCAAAAACCAGCCAATGACAGAGCTGGCTGATATTTGATGAGTTTTATCATCTCCTGTTTACTGTTACAGACTCACGAAATGCTGACGACGGACCTGGTGTGACCTCACTTCCGGTGGGTGGGGCCTagtgtgacatcacttcctgttccGGTGGATGGGGCCACAGGGTAGGGGCTGGGGGCAGAGTTATGGACCCTTAGGGGGCGTAGTTTGTTTGCCCCCACTatcttctctcccccttcctctctcctccatcctgccGAAGGACagggaaggaaaatgatgtgagGATGAGCAGAAAGAAAGAAGGACagggaaggaaaatgatgtgagGATGAGCAGAAAGaaagaagggaagggaaggaaaatgatgtgagGATGAGCAGAAAGAAAGAAGGACAGGGAAGGAAAAGACCATTTCTTCAGTATTTCTTCTATCGattacttcttcttcttctagtTCTTCTTCTTGGACATTGGAGCTTGGTTCTTCTGTTGCGTTCGCTCAAGCCTCTGTTAATCCGTTATGATGCATGAAAAAAATACCTAGAGAGAAAATCTACTGTTGGGGATATGGGGGCATATTGGGTTTATAGAACACTTACATTTTAGGTTTTGATTGAAGAAGTTCTCtttttctgactctctctctctctctctctctctctgactctgtctgtcATCATGCGTTTGTTTATTGAGTAAATATTTGTTCTATATCACCCTAAGGATCCGATGGACAACCTTTTTTCAGTTTGATTTCTGCCCAATAGGGTTTTAAAGCTACCATTTTCTTATCTTGAAAGTACTCCTAAGTTCCTGAGATACTCCTAAATTTTACTAAGATTCTCCTGTTGTACTAAGATATTCCTAAATTGTTTTGAGGAATAAGTAAGAATTGAGAGAGCTATGGGGAGAGAGAACTTCAACCTCTTTAAATAATTGATTTGTATTGTTAATAATGAtgatagtcctataaatactgaTATCAATGTCAATGCAAAACGATGAATGATGATAGCTGTTTGCCGTAGATCTGTTGTCATGTTTTTTGGAGTTTCAATCTGCTGTGTCATCTAGTTTTCATCGTTTATTTTCCTTTGGTTCTGTTCAAACTGTTTCCAAACTGTTCCCAAACTGTTTCCAAACTGTTCCAAAACGCCTTTAACTGGGTCCGATACATGCAACACGCATAAACTTTTCAGGGAGGGGTTAGATGTCGGATTGTGATTGTGAGCAACACAGATGGAACTGTGTGGCGTTGTGTAACGCAGCTCTTTACCTCTGATAGGTCCCCCCTCAGTGGTAGACAGAGAACCGGGGACACGTTCAGTAGCCAAATGTTGtcaaacgttgcagatagaaatgtcattAACAGAGCCGACGTGGTTCTTCATTCTACGTGTAAGAGATGCATGTTTGTTCTAAATAGCATTTTTCTATCCAAGCGTTCCAAAAACATTGTGTCCTGCTGAGTGCGCCCCAGTCATAGCCAAATGAACCGGCCAACCAACCAACCGTCAGACCTCCACACAGTATCTGATTTACAGCTAGCTGTGGACCATAGAGTTAGAAAGAGGACTTATACTGGGTTATATCCACCTAGAGCCTTCTTTCTACCTCTATGTTGTGAACGAGCTCCACCTCACATCCCCATGAGCTCTCCACTCGCTGTcaagtctctctgtctttctgattTTCCATGACATGTTTAGCATTGAGCTGCTTGCTTTACCAAGCCAGAGGAGAACATTCTAGAAACATTTTAGAATCTCTAAGACATTCTAGAAACTCTAGTCTAGACTCTAGAAACTCTAGTACATTCTAGAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1302904 lncRNA downstream 38350 10740805 ~ 10741991 (-) True LOC110487189
TU1302910 lncRNA downstream 40279 10739502 ~ 10740062 (-) True G1142500
TU1302912 lncRNA downstream 42071 10733912 ~ 10738270 (-) True G1142502
TU1302920 lncRNA downstream 46787 10733105 ~ 10733554 (-) True G1142510
TU1302923 lncRNA downstream 47824 10732106 ~ 10732517 (-) True G1142513
TU1303344 lncRNA upstream 15826 10929368 ~ 10930669 (-) True G1142867
TU1303351 lncRNA upstream 24248 10937790 ~ 10938758 (-) True G1142874
TU1303359 lncRNA upstream 30975 10944517 ~ 10945048 (-) True G1142880
TU1303314 lncRNA upstream 52460 10966002 ~ 10966478 (-) False G1142845
TU1303312 lncRNA upstream 53153 10966695 ~ 10967345 (-) True G1142845
XM_036942352.1 mRNA downstream 17974 10740805 ~ 10762367 (-) False LOC110487189
XM_036942353.1 mRNA downstream 18200 10740805 ~ 10762141 (-) False LOC110487189
XM_036942320.1 mRNA downstream 62974 10697026 ~ 10717367 (-) False LOC110485344
XM_036942322.1 mRNA downstream 62974 10702791 ~ 10717367 (-) True LOC110485344
XM_036942321.1 mRNA downstream 67978 10697026 ~ 10712363 (-) False LOC110485344
XM_036942357.1 mRNA upstream 68140 10981682 ~ 11101213 (-) True LOC118938429
XM_036942360.1 mRNA upstream 194004 11107546 ~ 11110630 (-) True LOC118938431
XM_036942359.1 mRNA upstream 201593 11115135 ~ 11116092 (-) True LOC110485570
XR_005035707.1 mRNA upstream 318943 11232485 ~ 11233755 (-) False LOC118938432
XM_036942319.1 mRNA upstream 410101 11323643 ~ 11338104 (-) False LOC110485558
TU1303216 other downstream 213876 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 480974 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 677823 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 798075 9980348 ~ 9982266 (-) True G1142121
TU1302244 other downstream 1111159 9667245 ~ 9669182 (-) True G1141973
TU1303981 other upstream 244344 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 367520 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 514148 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 542032 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 886928 11800470 ~ 11811231 (-) False LOC110485539

Expression Profile