RNA id: XM_036942357.1


Basic Information

Item Value
RNA id XM_036942357.1
length 1504
RNA type mRNA
GC content 0.56
exon number 3
gene id LOC118938429
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10981682 ~ 11101213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGCACCGAGAGGTAGCCGGAGCACGTACGTTGATTTCTCTCGAACAAGAGAGGAGTGAACGCACATCGCATTTTCCATCATACACCACACACATGCTGCAGGCTCTCTCAAGCTTACGATTCCAGCCAGAGATCGAGACGAGAGAGTGACAGAACGAACAATTGTCTGACACTGAAGCACGGACCAGAAAGCGACTGAGAGGAGGActatagagtagagagagagagaggggaacgggAGATCATTTGACCAAATATGCCTTAAAAGCCATTTTCGGAGGTCCGCCTGCGTGCCCATTGATTACATGCTCgtccttttatttatttatttttatcaacaTTTTGATTACAATTTCTCGGTTGTttgctctttgagtcagtgactGGCACGTTACGGGATGTGTTACGGAATTTGAAGATGGAGTTTTCCTCCCCTGTAGTGGATACGGTGCTGTTCCTCGTCTCGTCCTCCGGTTCATCTCAAGGTCCTACGGTCAGTTACAACTGCACCCCGCCACCCGCGCTACGAGCCGCATTTATTATCCCACAGGTGCGCTCTTCCTGCTGTAGACCCCTCCTCCACGCGGCGAGGTCAGGTCAGGACCCTTCCAAAACTCTCCATTCTGGTTCGACGATAACCACCAACTGTCAGcTCTATGCTGTCCCCGCTGTATGCAGATGGCTCCATCATCGTGGAGAGAAGAGTACCAGCGCCGGCCTTGTGGCCAGCTGACGGTATGCCACCCACCTCCCAAAACCATCGCCCACTCCGATGCCACCCACCGCCCACCAGCGGGTCCAGCGTCTGTGCCAACCCCACCTACTACCACGCCGTCTATGACGTGCGGGTCGACAAATGCCGGGATGCCCCGTTTCTCAGTGGGCGCGGCAAGGCGGGGAGGGGTCCTGGGGGGTCACTGGCTCTGGTGGCGGCAGATGGCGACCCGTTAGCGCCCCCTGTGAGGCGGCGAGGGGGACTGGTGGATCACAGGGATGTGATTAAGGCTCACCAGTCACACAAGCTGCAGAGCACGCCACAGGCCAGACGCAAGGAGTGGGAAATGGCACGCTTCGGTGACGAGGTGCCGAAccgaggaggtggaggaggcggAGGTGGAAGTGGAGGCGGTGGCAATGCCGGTCCTCTGGGGGCCCCTGGCCGCGGCGGGAGTCGGCAAGGCGGACCCCCGGGGGGCCAGCGTGTGTACAAGCAGTCGATGGCCCAGCGGGCCCGGACTATGGCTCTGTACAACCCGATCCCGGTCCGACAAAGCTGCTTTACACTCAACCGCTCTCTCTTCATCTTCAGTGAGGACAACTTTGTGAGAAAAGCTGCCAAAAAGATTACTGAATGGCCATATCCTTTCATAACCTAATGGTGAACTATCATATCAGATCGAATGGATTTAAGGTACTGTACAAATGTGTGTTGTGTGGGATTGTGTGTTAGGcctatgtgttgtgttgtgtggggttgtgtgttaggcctatgtgttgtgttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1303309 lncRNA downstream 12214 10968465 ~ 10969468 (-) True G1142844
TU1303310 lncRNA downstream 12797 10968411 ~ 10968885 (-) False G1142844
TU1303312 lncRNA downstream 14337 10966695 ~ 10967345 (-) True G1142845
TU1303314 lncRNA downstream 15204 10966002 ~ 10966478 (-) False G1142845
TU1303359 lncRNA downstream 36634 10944517 ~ 10945048 (-) True G1142880
TU1303976 lncRNA upstream 2641 11103854 ~ 11157192 (-) False G1143378
TU1303974 lncRNA upstream 16515 11117728 ~ 11147364 (-) False G1143378
TU1303999 lncRNA upstream 25820 11127033 ~ 11128124 (-) True G1143398
TU1303978 lncRNA upstream 34494 11135707 ~ 11157192 (-) False G1143378
TU1303973 lncRNA upstream 37494 11138707 ~ 11147364 (-) False G1143378
XM_036942587.1 mRNA downstream 68140 10780341 ~ 10913542 (-) False LOC110494931
XM_036942352.1 mRNA downstream 219315 10740805 ~ 10762367 (-) False LOC110487189
XM_036942353.1 mRNA downstream 219541 10740805 ~ 10762141 (-) False LOC110487189
XM_036942320.1 mRNA downstream 264315 10697026 ~ 10717367 (-) False LOC110485344
XM_036942322.1 mRNA downstream 264315 10702791 ~ 10717367 (-) True LOC110485344
XM_036942360.1 mRNA upstream 6333 11107546 ~ 11110630 (-) True LOC118938431
XM_036942359.1 mRNA upstream 13922 11115135 ~ 11116092 (-) True LOC110485570
XR_005035707.1 mRNA upstream 131272 11232485 ~ 11233755 (-) False LOC118938432
XM_036942319.1 mRNA upstream 222430 11323643 ~ 11338104 (-) False LOC110485558
XM_036942318.1 mRNA upstream 222430 11323643 ~ 11359141 (-) False LOC110485558
TU1302932 other downstream 159315 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 415217 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 682315 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 879164 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 999416 9980348 ~ 9982266 (-) True G1142121
TU1303981 other upstream 56673 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 179849 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 326477 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 354361 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 699257 11800470 ~ 11811231 (-) False LOC110485539

Expression Profile