RNA id: TU1304028


Basic Information

Item Value
RNA id TU1304028
length 1219
lncRNA type read_through
GC content 0.36
exon number 2
gene id LOC118938432
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11218089 ~ 11233755 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATGAAGTATGCAACAAATCAAATTGGATTTGAATGGAAGGAGATCGAGAGAAGATTGAatgaataactgagcagttacagattaaaacatattgctgaatatgaataactgagcagttacagattaaaacatatggctgaataactgagcagttacagattaaaacatatggctgaatatgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagattaaaacatatggctgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagattaaaacatatggctgaatatgaataactgagcagttagactaaaacatatggctgaatatgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagattaaaacatatggctgaatatgaataactgagcagttagactaaaacatatggctgaatatgaataACTGAGCAGTTACAGACTAAAACACATGGCTGAATATGAATAACTGAGCAGTTACAGACTAaaacatatggctgaatatgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagactaaaacatatggctgaatatgaataactgagcagttacagattaaaacatatggctgaatatgaataactgagcagttacagattaaaacatatggctgaatatgaataACTGAGCTCTAAACACTCACATGAAATCATGTAACGTTGCTGTTCATTAGAACTTGTACATTCTACCAATTCTACTTCTATACCGAATCATGAAACATGTTATAACCGGGTTATTCATCTGTTATAAAATGTTATAACCACACCTCTGGCCTCTGTTCAAACATGCTGTTGAAGTCTCCGAAACCCTGCGCTCCTGTGAACTCTCCGAAGATCTTCCTGAACATTTCCTCTGGGTCGATGCTGGCCCCCCCGGCCCTCCAGTACTGCTGTCCCCCCGCCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304035 lncRNA downstream 8100 11209710 ~ 11209989 (-) True G1143425
TU1304024 lncRNA downstream 37120 11180288 ~ 11180969 (-) True G1143414
TU1304016 lncRNA downstream 42306 11175480 ~ 11175783 (-) False G1143410
TU1304017 lncRNA downstream 42306 11175480 ~ 11175783 (-) True G1143410
TU1303971 lncRNA downstream 60897 11153797 ~ 11157192 (-) True G1143378
TU1304046 lncRNA upstream 13463 11246223 ~ 11246446 (-) True G1143436
TU1304047 lncRNA upstream 14224 11246984 ~ 11247230 (-) True G1143437
TU1304053 lncRNA upstream 28313 11261073 ~ 11261540 (-) True G1143441
TU1304068 lncRNA upstream 91468 11324228 ~ 11325698 (-) False LOC110485558
TU1304070 lncRNA upstream 95909 11328669 ~ 11359107 (-) True LOC110485558
XM_036942359.1 mRNA downstream 101997 11115135 ~ 11116092 (-) True LOC110485570
XM_036942360.1 mRNA downstream 107459 11107546 ~ 11110630 (-) True LOC118938431
XM_036942357.1 mRNA downstream 116876 10981682 ~ 11101213 (-) True LOC118938429
XM_036942587.1 mRNA downstream 304547 10780341 ~ 10913542 (-) False LOC110494931
XM_036942352.1 mRNA downstream 455722 10740805 ~ 10762367 (-) False LOC110487189
XM_036942319.1 mRNA upstream 90883 11323643 ~ 11338104 (-) False LOC110485558
XM_036942318.1 mRNA upstream 90883 11323643 ~ 11359141 (-) False LOC110485558
XM_021556653.2 mRNA upstream 192996 11425756 ~ 11429422 (-) False LOC110485554
XM_036942341.1 mRNA upstream 201872 11434632 ~ 11446652 (-) True LOC110485550
XM_036942335.1 mRNA upstream 214261 11447021 ~ 11494371 (-) False LOC118938427
TU1303981 other downstream 58828 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 395722 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 651624 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 918722 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 1115571 10097922 ~ 10102518 (-) True lgals2b
TU1304064 other upstream 48302 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 194930 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 222814 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 567710 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 567710 11800470 ~ 11811231 (-) False LOC110485539

Expression Profile