RNA id: XM_036942319.1


Basic Information

Item Value
RNA id XM_036942319.1
length 5568
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110485558
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11323643 ~ 11359141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgtgtgcgtgcgcacgtaCCAGGGCATGTGAGAAGGTCCTGCTCTATTTCAAGGGAATAACAGTGTTTTCCATTCTGTAGATACCAATCTCTACAAATAATGAGAGAAGACACACAGGGAagagaaaggaagacacagagtgcCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATAGTGAATATAAAGAAGACACACAGGGAAGAGAAAGGAAGACACAAAGTGCCTTCCAAGATGGAAACATTCCATACTGAATATAAAATAGATTACACAAGGACTCCACCACTATGGcgcccttcctccccctcctcctcctcctctcctcctcttcctctgtcctctccagtGACTGTCCAGAGGATTGCTCTTGTCAGGCCCAGGGTTCCATCTTCTGCATCCAGCGTCGTTCCACCGTCGTCCCCCGCGGCCTCCCTTCCTCTGTGAAACATCTCTACGTCTTCCAGAACGGCATCAACACTTTAGCCCAGGAAGACTTCACAGggCTGGGGGAACTGGAGATGCTGGACCTGTCCCAGAATAAACTCACGGAGGTCCCGGATGGGGTCTTTGAAACGCTATCTTCGCTGAGGAATCTCGATTTGTCCGCAAACTACATTACCCACATCGCCAAGGATAGCTTCTCCGGATTGGTGCAACTCGAGAGGCTGTATCTCCACGGCAACCTCATCAAGAGCATCCAATCGGAGGCCTTCGAAGTTCTGGAGGATCTTCTGGAACTGAAGCTCCAGGGGAACCAGTTGACCGGTCTCCCAATGCTCCGTCTCCCCAGCCTTCTCCTCCTTGATCTCAGCTTCAACTCTCTCCCGACGCTGGGTCCCCAAGACCTCCAGACCCCCCACCTCGAGTCGCTCAAAGTGGCTGCGTTGGGGCTCACCACCCTGGACTCAGATCTGATGGCCTCCCTGGGGAACCTCCATGACCTTGATGTGTCCCAGAACCAGCTGGAGGGGATGCCTGAAGCATTGAAGGCCACCCGGGGGCTGATCAAGCTCAGCCTGGCTGCCAACCCCATTGGGGAGCTCCGGAACGAGGACTTCCAGAGTCTGGTGGGTCTCCAGGAGCTGGATCTCAGTGGGCTGAACCTCCAGGGCTTGCCCCAGGGTTTCTTCCAGCTCTTCCCCAGGCTGGGGCACCTCACGGCGGCCGAGAATCCCTTcaactgtctctgtcctctggccTGGTTCCCTGGCTGGCTGAAAGAGAAGAATGTGGATCTGGGACGCACAGAGGAGACAAGGTGCCACTTCCCACCAGTGAATGCTGGCAAGgtgcTGGCGGCGCTGGACCATCAAGATTTCGGCTGTCCACCTACGACCACTGTCATGACGAATGCCCTAGGGGAGGGGAGTACTTCCGCACCCCCCATTCCGACTACATCCCCTGGAAACACACATACCAACGCCATCCCCCCACCTCCGCCATTCCCTAGTGATGAACCATCCTCAACGGAGACAGACATTGAGAGTCGTCCCCCTCCTCCAGCTTCTCCGACTACCGCTTTCAGGGATGAGGGCCACATCTGCCCGCCGAACATCTGCCTCAATGGGGGTACGTGCCGCTTCGATCCTCTGGGACAGCTTGGATGTCTCTGTCCCCGCGGAACTATGGGCTTGTACTGCGAGAACCTGGAGTCGTCTAAACACAACCAGCCACCTCTCCAAACCTCCGCCCCCGAGGTTATGGCATCCATGGTCGCCCCCATTGTAACCTCTGATCCCAATGACATCAGTTCCCGTCAGGTGACCTCCACGTCCATCCTCCTCGACCTGCACCGTTTCCTCGAGACGAGGCCGCACATCCGCGGAATTAAGCTGACCTACCGGAACCTCTCAGGGCCCGACCGGCGCCCCATGTCCCTCAGCGTCCCCGCCTCGTACCCAGAATACACCCTCCGAGGGCTCCGGCCCAACTGTACCTACTCGGTGTGCGCCAGCCCCCTGGCAGAGAGGGTGAACGGGGGTGGAGGCGGTGGAGGTAGCCCTACCGAGGGAGGGTCTTGTATGGAGGCTCGTACCGAGGGAGGTCCCCAAGCTTCGTCCTTGGAGCCCCAGGTGGATGATCAGAGCCAGCTCACCTACACCCTCATCCCAGCCTTGGCTGCTCTCGCCCTGGTCACGGGGGTGGCGGTGGTGGCCATCCTGGTTCTTTTCCTCCGAAGGAGACGGGCTCACATGGCGCTGGAAGGGGGTGAGATGGGACCAATGGAACTGGAGGGCCTTAAGGCTTGTCTGGAGAACGGAGTGGGGAACGGGGGCACCCTACCCCACAAGGGAGCGGATATCGCCCCCTGTCACACCTCCATCCCGACCCAGCCACAAAATGGCGGATCGTCACATCCCCTTCCACAAAATGGTGGTTTAGAATATGAGGCCCCCCTCATGAAGGGACAGGGGCACTGTCCATCGAATAATAATGTGGCATCCTTGAAGCCATCGTATTTCTAGAAACTCAGTCTGTTGTCTTCATGGATTTCTTAATATTTCTCAATGAGACTCAATgtactcaatgacattcagagctATGGAATGGAACAGAAGTAACTACCCCTGTAGAGGGTAACGCTACGCCCCGTTATCTCTAAGTGGATGGGAGGACTCTACCATTATGAGGCAGTGAAAGGGGGGTGTTTTAGCTCATCCAGCAGAGTTCAAGTTGATAGAAATGTAACAAGTATTTAAACCTAAAGTGCAATCGCCATGCCAAAAGGGGTCTTATAATCGGACTGAAAACGGAAGTGCCTTCTTGCATTGACATGATATGCTGTAATAATGATGCTTTTATTTTTGAAATGTTGATGTTTTGAAAAGAGCTGCATTGAATGAGTTTGCAATCCTTTTGCTGGATCAGGAGATTGGGAGAGCAGGGCTTGTGGAGGTATGGGGAAGGCACAGAGTCAAGGTTGGGAGGAGTAGAGGTGGGGTgcagaggtagagatagagacacaggtgtgtgtgtgctctgtagaCTGTTCAGCACTTCCGGAAATGAACGAGGCACCCCTCCCCACCTGCCCCCTGGGATAACTTGCAGTGAAGAGAAGAGAATCTCTCTGCAACAGGGTGAAATGCTGATTCTGTAGAGATGGTACCACGGATAGAATAGAGTTTTAGACGACATTACCACCAGTCAGATTTCCCTTCATCCTGCTACCCCCCCCTTACGGTTGGTGCGTTCATCTtaactaggtgggacaaccacatatcacagtcgtaaTGAGTAtgtttttcctcaataaagaagCTATCGGtcaagtcagtgctagtaggggAAAAAAACTAGAAAAGactagtgctctggtcaaaagtagtgcactatacagggaatagggtgtcacttgGGACGAAGCCTCTGTCCTTAGCGGCGTGGTCAGTAGCTGTGATGGACGCTATTTGAAGGTTGTTGTCGAGCGGGTTTCATATGATGTTTTTGTAAAGTGTTTTGTATGTATTGTTTTATCATGGATTTCtctgttgctgccatgctgtttctcctgtcttgttGTCGTCAGAAATGTTGATGCTGTATTGAATTGTGCTGTTCCCTCGACACGGCAAAGGGTTGGGGTCCATTTCATTTCAATTCAGAAAGTTTACAATTGAAAGGGTTTATTTACTTTTAAAGATGAGTTTTCCTTTGTTAAATAGGTCATATTCCAATTCACCTGAATTTACTGAATTTAGATTCAATTTACCCCTACCCAAAACGCTTCACATTTTCATCATGTAGAAATTGTTCACCAAGTAAATGTGAATAAGAAGTATCAGAAACAGCACAGACTCTGAACTCTAAACTCCCACACTCTTCTTCTTTACTGTCTAAAACTGTCTGCCAACTACAATAGCCTGCCAAAGCTACATAAGGACATGGTTAGCTCCAGAAACACCAATccttgtcccaaatgacaccctattctctacatagcaCACTACTTATGaacagagtcctatgggccctggtcagaagtagtgtactTTAGAGAATAGGatcccatttgggacacaaacctaGTCTCTTTTTGAACAATCAAGCTCCAAAACTGTCCTCCAAGCTCTGTCACCGCAAACCCTGAGCCATTAAAGTGGCACACACACATGCCGAAAAAAGCACCAGAGTTCAAAGACTTTGAGAGCAATTTACTATATGTGTCGAAGGAGTGGAAACCAGTCATTTCCTTGACTTGCTACTGACTGTGGCGTTTTGAAGATATGGCCGCAGTTAACCAATGAGATCCCCAGTatctttttattgttttattctctctctttctattttcctctttctttgtctgtttttgtctctatctgcttctctctctctctctctggctctctctctctctgactctgttattctctctctctctctctctctctctctctctctctctgtctcttctctccttttctctttattctattttctttctctcattctctttccttttctttctctctctttgtttccttCACCCCTCCCTTTGTCTCGGTCAACAAGGTTCTTGGCCGTGTTTTCGGGCCTGTTTTGCTTGCCTGCAGCCAACTAGACTATGAAAAGTTCATACGGAATGAAAATCACGCCGTTCTGATACATTTATCTTTGTTTCCTGTCTTGGAGAATGGGAAGTACAAATGTGTCACCATTCAATTTCTttttctgttttctttctctcatttTTGTTGATGTTCTTTTCTTTTCttgatccctctctgtctctcgctctgcctctctgtctctctctctgcctctctgtctctcgctctgcctgtctctctctctctgcctgtctgtctctctctctgcctgtctgtctctctctctgcctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304053 lncRNA downstream 62103 11261073 ~ 11261540 (-) True G1143441
TU1304047 lncRNA downstream 76413 11246984 ~ 11247230 (-) True G1143437
TU1304046 lncRNA downstream 77197 11246223 ~ 11246446 (-) True G1143436
TU1304028 lncRNA downstream 90883 11218089 ~ 11232760 (-) True LOC118938432
TU1304035 lncRNA downstream 113654 11209710 ~ 11209989 (-) True G1143425
TU1304106 lncRNA upstream 50759 11388863 ~ 11389064 (-) True G1143485
TU1304144 lncRNA upstream 135833 11473937 ~ 11474530 (-) True G1143517
TU1304149 lncRNA upstream 142288 11480392 ~ 11486014 (-) True G1143521
TU1304203 lncRNA upstream 227970 11566074 ~ 11572819 (-) True G1143568
TU1304230 lncRNA upstream 277694 11615798 ~ 11617512 (-) True G1143588
XR_005035707.1 mRNA downstream 89888 11232485 ~ 11233755 (-) False LOC118938432
XM_036942359.1 mRNA downstream 207551 11115135 ~ 11116092 (-) True LOC110485570
XM_036942360.1 mRNA downstream 213013 11107546 ~ 11110630 (-) True LOC118938431
XM_036942357.1 mRNA downstream 222430 10981682 ~ 11101213 (-) True LOC118938429
XM_036942587.1 mRNA downstream 410101 10780341 ~ 10913542 (-) False LOC110494931
XM_021556653.2 mRNA upstream 87652 11425756 ~ 11429422 (-) False LOC110485554
XM_036942341.1 mRNA upstream 96528 11434632 ~ 11446652 (-) True LOC110485550
XM_036942335.1 mRNA upstream 108917 11447021 ~ 11494371 (-) False LOC118938427
XM_036940206.1 mRNA upstream 368470 11706574 ~ 11712335 (-) False LOC110485537
XM_036940204.1 mRNA upstream 375354 11713458 ~ 11722106 (-) True LOC110485529
TU1304064 other downstream 41551 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 164382 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 501276 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 757178 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 1024276 10295744 ~ 10299367 (-) False G1142620
TU1304123 other upstream 89586 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 117470 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 462366 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 462366 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 462366 11800470 ~ 11811231 (-) True LOC110485539

Expression Profile