RNA id: TU1304070


Basic Information

Item Value
RNA id TU1304070
length 400
lncRNA type sense_over
GC content 0.51
exon number 2
gene id LOC110485558
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11323643 ~ 11359141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGAGACTTCTGGACCGCAACTTTGACACGCAGAGAGAAATGTTCTGCACAGGGATTTCAATAGGCTACCTTTCTGAAGTTTGTGGACAATACAACTGTATTAAAGGGATTTGAGCCTCATAGACACGTCGATAAAGGGGATACGAAATAGCACTGTTTTGAGCACATTTCGGGACTACATTTTGCCAGATTACACAAGGACTCCACCACTATGGcgcccttcctccccctcctcctcctcctctcctcctcttcctctgtcctctccagtGACTGTCCAGAGGATTGCTCTTGTCAGGCCCAGGGTTCCATCTTCTGCATCCAGCGTCGTTCCACCGTCGTCCCCCGCGGCCTCCCTTCCTCTGTGAAACATCTCTACGTCTTCCAGAACGGCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304068 lncRNA downstream 2971 11324228 ~ 11325698 (-) False LOC110485558
TU1304053 lncRNA downstream 67129 11261073 ~ 11261540 (-) True G1143441
TU1304047 lncRNA downstream 81439 11246984 ~ 11247230 (-) True G1143437
TU1304046 lncRNA downstream 82223 11246223 ~ 11246446 (-) True G1143436
TU1304028 lncRNA downstream 95909 11218089 ~ 11232760 (-) True LOC118938432
TU1304106 lncRNA upstream 29756 11388863 ~ 11389064 (-) True G1143485
TU1304144 lncRNA upstream 114830 11473937 ~ 11474530 (-) True G1143517
TU1304149 lncRNA upstream 121285 11480392 ~ 11486014 (-) True G1143521
TU1304203 lncRNA upstream 206967 11566074 ~ 11572819 (-) True G1143568
TU1304230 lncRNA upstream 256691 11615798 ~ 11617512 (-) True G1143588
XR_005035707.1 mRNA downstream 94914 11232485 ~ 11233755 (-) False LOC118938432
XM_036942359.1 mRNA downstream 212577 11115135 ~ 11116092 (-) True LOC110485570
XM_036942360.1 mRNA downstream 218039 11107546 ~ 11110630 (-) True LOC118938431
XM_036942357.1 mRNA downstream 227456 10981682 ~ 11101213 (-) True LOC118938429
XM_036942587.1 mRNA downstream 415127 10780341 ~ 10913542 (-) False LOC110494931
XM_021556653.2 mRNA upstream 66649 11425756 ~ 11429422 (-) False LOC110485554
XM_036942341.1 mRNA upstream 75525 11434632 ~ 11446652 (-) True LOC110485550
XM_036942335.1 mRNA upstream 87914 11447021 ~ 11494371 (-) False LOC118938427
XM_036940206.1 mRNA upstream 347467 11706574 ~ 11712335 (-) False LOC110485537
XM_036940204.1 mRNA upstream 354351 11713458 ~ 11722106 (-) True LOC110485529
TU1304064 other downstream 46577 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 169408 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 506302 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 762204 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 1029302 10295744 ~ 10299367 (-) False G1142620
TU1304123 other upstream 68583 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 96467 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 441363 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 441363 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 441363 11800470 ~ 11811231 (-) True LOC110485539

Expression Profile