RNA id: XM_021556653.2


Basic Information

Item Value
RNA id XM_021556653.2
length 1906
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC110485554
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11425756 ~ 11429422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAATACAAAACAAAAGCCACCCAACCTACAGTGGCTCCTTCTCTACCTGTGGGCAGCCAATTATTTGCTCATTTCACCATCGTCAACATGCATTGAGGAAGAAGAAAGAAGACGTCAACCATGCGCCAATCTCGTTGAGCGTCATGAGCCGGATTTGATACAAAAAAACATGAGCCCAGCTCTGATGCAATCCTGTACAGCCCTTTCTGGAAGGCTGTATAGAAGACCCTGTTTTCTATTCATCCTGGTGGCAGTGGCTGTCTCCGTGACCTACACCACCTTCGCCTtgaattggtggaatgacccaCAGCGACCCTCGGTAATCAGTCACACTGGAAAGATTGCTGATGATGATCAGGTGAACCCGCGTGTCTTGACCAATCGGAATGGTGTCCAATGGGAGGATCCCGGGCGGTACCACGTGGCATACCCGCGGGGATACAAATTCATAATGGATGAGCCGGAGAAGTGTCGGACCGGGAATCAGGCCCCGTTCCTGGTGCTGATGGCCCCCGTGGCGCCTGGTAACCTGGCCTCCAGGGACGCCATCCGCAGGACGTGGGGTAATGAGACCCTGGTGCATGGGAAGAAGGTACAAACGCTATTCATGTTAGGACTTCCTGGAGGACCAGGTGCCCAGGAGCTGCAGGAGAAGGTGAACCAGGAGAGCCGGGTGCACCACGACCTCCTCCAGAGCAACTTCAAGGACACCTACCATAACCTGACCATCAAGACCATGGTGATCCTCGAGTGGCTCGTCTCGCGGTGCCCTGAGGCCTCCTACGCCATGAAGATTGACTCAGACGTGTTCCTCAACGTCCAGAACCTTGTCTCCATGCTGGTCAACCCTGACACTCCCAAACAGAACTACATGACCGGTCTAGTCTGGTGGCACAGCCCGGTGCTGAGAAACCCCAACAACAAGTTCTTCCTGCCTTATGAGGTGATGGCTGAGTCGGAGTATCCTCCGTACCCTCTGGGGTTTGGCTACATCATGTCCATGGACCTCCCCAAGAAGATCATGGGGGTCACTCCACAGATCAAGCCCATCTACATCGAGGATGCCTACCTGGGGATGTGTCTGAAGCGACTGGGCATCTCCCCCACCAATCCTCCCAGAAAGTCACTCTTTGACGTCAACCCCATCTACAGCTACGGACGCTGCAAACTGTCCACCGTGGTTGCCGTGACGACGACCAAAGTGAGCCAGCTGCTGAGGTACTGGCAGGACTACACAAGGCCCGGCCCGCCGTGCTGAGAGGGTAATCACCACAGCAAACATTGCTTCTTCCTGTTTGGAAAACGGAATTCATGAAGACACTTCCTGTATGTTTCCCTTCCTGGAAATGTTGAATTGGAACTTTGGGTAAGAGACATTGGCTCTTGCATAAGAGACATCCGTTCACTCTTGTTGGGAGATCCATAGGTTGTTTGGTATTTTGCTAATGTATACCTCAACCCTTCCCTTTACATTGACTGTGGTGCAGTGAAGGAGGTGGTGTTGGAGATGGCTTATTGGGCCTGTCTCAATACCTTTCAACTGTCACATGCTGCAACAAAAAGATCCCAAGCTGCATATTTGTATCATACCTGAGAGCCTTAAGACTGGATCCTATCAGATCTGCGCTAGCCGACACCCGCATAGTGGTTGTATTGGTGTCGGAGGTGGcactgtcaaatccacaagcggctccCGGCACTATACCTAaagtggacattgccattggctgacacatattgtgttattttatggttGGTTATGACCCCTACATCAATAGCCTacgtgtcaacagtatgtttatgttataTAGTATTGTTGAGAAATTTAGagttacttagaaatgtccttgttttgggGTGAAAAACACTttttatccattaaaataacatcaaattgatcaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304106 lncRNA downstream 36692 11388863 ~ 11389064 (-) True G1143485
TU1304070 lncRNA downstream 66649 11328669 ~ 11359107 (-) True LOC110485558
TU1304091 lncRNA downstream 94295 11330886 ~ 11331461 (-) True G1143471
TU1304068 lncRNA downstream 100058 11324228 ~ 11325698 (-) False LOC110485558
TU1304053 lncRNA downstream 164216 11261073 ~ 11261540 (-) True G1143441
TU1304144 lncRNA upstream 44515 11473937 ~ 11474530 (-) True G1143517
TU1304149 lncRNA upstream 50970 11480392 ~ 11486014 (-) True G1143521
TU1304203 lncRNA upstream 136652 11566074 ~ 11572819 (-) True G1143568
TU1304230 lncRNA upstream 186376 11615798 ~ 11617512 (-) True G1143588
TU1304282 lncRNA upstream 277251 11706673 ~ 11712341 (-) True LOC110485537
XM_036942318.1 mRNA downstream 66615 11323643 ~ 11359141 (-) False LOC110485558
XM_036942319.1 mRNA downstream 87652 11323643 ~ 11338104 (-) False LOC110485558
XR_005035707.1 mRNA downstream 192001 11232485 ~ 11233755 (-) False LOC118938432
XM_036942359.1 mRNA downstream 309664 11115135 ~ 11116092 (-) True LOC110485570
XM_036942360.1 mRNA downstream 315126 11107546 ~ 11110630 (-) True LOC118938431
XM_036942341.1 mRNA upstream 5210 11434632 ~ 11446652 (-) True LOC110485550
XM_036942335.1 mRNA upstream 17599 11447021 ~ 11494371 (-) False LOC118938427
XM_036940206.1 mRNA upstream 277152 11706574 ~ 11712335 (-) False LOC110485537
XM_036940204.1 mRNA upstream 284036 11713458 ~ 11722106 (-) True LOC110485529
XM_036940202.1 mRNA upstream 294304 11723726 ~ 11732445 (-) False LOC110485542
TU1304064 other downstream 143664 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 266495 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 603389 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 859291 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 1126389 10295744 ~ 10299367 (-) False G1142620
TU1304109 other upstream 26152 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 371048 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 371048 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 371048 11800470 ~ 11811231 (-) True LOC110485539
TU1304416 other upstream 522173 11951595 ~ 11952568 (-) True G1143743

Expression Profile