RNA id: XM_036942341.1


Basic Information

Item Value
RNA id XM_036942341.1
length 1922
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110485550
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11434632 ~ 11446652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGTCACACACTCGCCCTACCCTGTAGGCTACAGAACACCTGTGAAGCTACACCAACTCCAGCATAGACCCATTGACGTGTGAGGCTCAGAGCCCACCTGGAGTGTGTTCTACTGGATAGACCTGAAACACAGGGGAGGGAGGTGCTGGGATTGTCCTGGGTTggtcgtacacacacacaggaggggtGTTCTTTCCTTCACCAGTCACTGCCACAAGGATCCATGGTCTCTCTGAGGAGGGGAACTGTCTGCACTCATGGAGAAACAAGGAGGGAATGGATGTAAACGTCAAGTCGTGGTCGAGAGCCCTGTACGACCACTGCGGTCTCTGGTGCGGCCGTgtttcatcttcctcctcttcctgtccacGGTCATCGTGATCATCCTCTTAGGTTTTCCTGACAGATTCTCCCAGACAGACTGGTGGAAAAACCTATCACTGTACACATACTACCATAGATGGACCAACCCCGACCGCCACCGTGGACCATCCCCAACCACCATTCCCCCAACCACAGTACCAGCCCCACCCTCAGCCACCATACGTCCGCTACCAACCAATCACTACCACTTTGGCTACCCTCGTAACTACCACTTCATCGTAGACGAACCGGACAAGTGTAATACCCAGACCCCGTTCCTGGTGCTGATAGTCCCCGTGGCGCCCGGTAACCTGGCCGCCAGGGACGCCATCCGCAGGACGTGGGGTAATGAGACCCTGGTGCAGGGGAAGAAGGTACAGACGCTATTCATGCTAGGACTTCCTGGAGGACTAGGTGCCCAGGAGCTGCAGGAGAAGGTGAACCAGGAGAGCCAAGTGCATCATGATCTACTCCAGAGCAACTTCCTGGACTCTTACCTCAACCTCACCATTAAGACCATGGTGATTATGGACTGGCTGGCCACCCACTGCACCAATGCCACCTACGCCATGAAGATCGACTCAGACATGTTCCTCAACGTAGAGAACCTGATGACTATGTTGCTGAGACCGGACGTCCCCAAGGTGAACTACCTGACAGGGATGCTGATGTGGGATCGCCCGGTCATCCGGAACCCCAACTCCAAATGGTATGTTCCGGTGGAGATGTTAGCCGACAACCGATACCCGACCTACACACTTGGTATGGGATACGTGTTCTCCAACGACCTGCCGGAGAGGTTCGTGGCGGTATCCAAGGACATCAAGCTTTTTAATATAGAAGACGCCTATGTTGGCGCCTGTATGAAGAAACTGGGCCTCTCGCCCACAAACTCACCAGATCCTTGGCAATGGAAGGCCTATCTCGGCAAGTACAATCGCTGTGAATTTTCCAAAGTCATCACCTATATTTTGAGCCGCCCGTCCCAGATAGTGGACTACTGGATGGACCTGAAGAAGACACCTGGTCCACCCtgtccctagacactgatctagtGTCCATTTGGTATTTTTCATCCTAATGGTCGAGTCTAAGTCTTTAGGTAGCCAAACAGATATATATACCTGTATATATCGATGAAAAAAACAcagctgtagctctgccaccttccgcCTCAGATGTGGAAGGCTGACATCGGCgcatgtggtggattgagatgcagcccatgcaataaaacagatatctctagcttaaacagaccGTTTCTGATGGGAATTTTTATGTTACGCTTATTCAATTTCCGCGTGGACATTGAATCTGGTACTAGTACTAAGTTTCACGGACTCTATCAGTGTCCGAGGGGCAGGTAGCTGAGCGGCTAGTGttgtgccagtaactgaaaggttgctagttcaaatcccctaacagacaaggtgaaaaatatctgtcgatgtgcccttgagcaatgcacttaaccctaatttcttCAATGTTGATAATGACTGACCTTGGCTGTAACCCCATTCTTGGGGGGAGTtgagatatgcaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304106 lncRNA downstream 45568 11388863 ~ 11389064 (-) True G1143485
TU1304070 lncRNA downstream 75525 11328669 ~ 11359107 (-) True LOC110485558
TU1304091 lncRNA downstream 103171 11330886 ~ 11331461 (-) True G1143471
TU1304068 lncRNA downstream 108934 11324228 ~ 11325698 (-) False LOC110485558
TU1304053 lncRNA downstream 173092 11261073 ~ 11261540 (-) True G1143441
TU1304144 lncRNA upstream 27285 11473937 ~ 11474530 (-) True G1143517
TU1304149 lncRNA upstream 33740 11480392 ~ 11486014 (-) True G1143521
TU1304203 lncRNA upstream 119422 11566074 ~ 11572819 (-) True G1143568
TU1304230 lncRNA upstream 169146 11615798 ~ 11617512 (-) True G1143588
TU1304282 lncRNA upstream 260021 11706673 ~ 11712341 (-) True LOC110485537
XM_021556653.2 mRNA downstream 5210 11425756 ~ 11429422 (-) False LOC110485554
XM_036942318.1 mRNA downstream 75491 11323643 ~ 11359141 (-) False LOC110485558
XM_036942319.1 mRNA downstream 96528 11323643 ~ 11338104 (-) False LOC110485558
XR_005035707.1 mRNA downstream 200877 11232485 ~ 11233755 (-) False LOC118938432
XM_036942359.1 mRNA downstream 318540 11115135 ~ 11116092 (-) True LOC110485570
XM_036942335.1 mRNA upstream 369 11447021 ~ 11494371 (-) False LOC118938427
XM_036940206.1 mRNA upstream 259922 11706574 ~ 11712335 (-) False LOC110485537
XM_036940204.1 mRNA upstream 266806 11713458 ~ 11722106 (-) True LOC110485529
XM_036940202.1 mRNA upstream 277074 11723726 ~ 11732445 (-) False LOC110485542
XM_036940203.1 mRNA upstream 277074 11723726 ~ 11732449 (-) True LOC110485542
TU1304123 other downstream 5267 11427690 ~ 11429365 (-) True LOC110485554
TU1304064 other downstream 152540 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 275371 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 612265 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 868167 10564460 ~ 10566465 (-) True G1142757
TU1304109 other upstream 8922 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 353818 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 353818 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 353818 11800470 ~ 11811231 (-) True LOC110485539
TU1304416 other upstream 504943 11951595 ~ 11952568 (-) True G1143743

Expression Profile