RNA id: TU1304282


Basic Information

Item Value
RNA id TU1304282
length 1580
lncRNA type sense_over
GC content 0.46
exon number 4
gene id LOC110485537
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11706574 ~ 11712341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACTGTTTGTACGCGTACTGTAGGATAGGGTTGCCTCTCACAAATGGGAATTGAATCAATATAACGAACTATTTTCTATTCAAAAACATTGATCGGAAGGGTAGGAGTTTCTTCTCCAACAGACATTTGAATTCCATATCCGTATTGAATCACCTTGGTTGACCTATTGGCTATACCCTTGAAGCACTAGCAGACTGGCTCGTTAACCAAACATATGCTTATTCGTAGCGGCGTCGATCACAGCACAGGACAAGGAACACATTGCAGTAACAGTACCGAGATCTCTTAACCGAACGGGAGACGTAGGCTACGTAGCACTGAGCAGCTGACTTGGAAACACAGGCGCTATAATTTTCCCAACGTGGCTGCGTCAAGAGAACTCGACCAAAAAGGGGATTGCTCAAGGGGATCGATTTAAAGACCACCACGGTATTTGGAGTCGACACATTGTAGGGTACCACTCTCGACTTGTTGAAGATAACCCACTTATTTTTCATTCGCAAAACTGAAGTTCTCGGCTTTCACATGATGTACACTATTACTAGAGGTCCCAGTAAACTTGTTACACAGCGCAGGACAGGTGAGCATCAGTTATGTAATTATGGTTTCTCTTCAATCCAATTATGTATTTCCTATATTATTGATATTATCGATAGTAGCATTCGAATCATGTCAATAAAGCAGTAGTGCACTTTTCAAAACCTATATAATGAGCACGGAACTGTGTTTTAATTGAACCTAGGCCCTCGATTAGATCTGTCGGATTTAAAAGCATATTTTAATGACAAGCATGCATGTTGTGATCAGTGCAATCTTGCTATTCTCTTTCCATTTCAGGTCCCACGCAGCAAATTGAGAATAAAACCAACGACTTGAAGCTCAAACCGACCCCCTGGTTATCCTCAAACTCTCCAACCCCTAAGATAGTGTTTAATCGCCTGAACGGGAAGAGATACCACACTGCAGCCTCACAAAAGGAAGACACCACATCTGAAGGCTTCACCCCGGCCCATGAAGAGAATGTCCGATTTGTGTACGAAGCATGGCAGGAAATCGAGCAGCAGCTGGCAGGAGATAGAGAAGGCCGTGTGGAGCCTGCTGCTGTATGTGGCCAGGGGCCCGTGCAGTACGCAGAGAAGACGCCCAGTACCACAACGAAGAACTTTGTGCCTATAGACCTGGAGGAGTGGTGGGCCCAGCGCTTCCTGGCCAACATCGCTAACCTGTCGTGACAGGAAGGGAAGGGACAGGAGGTGCTAACTTGCGTGGAAGCCACATGGGCCAAGCTGTGATCAGAAGAAGAGGtgctggaggggtggagagaggacatTCTGGTTCTGAAGCTACAGTTTAGTGGGCTTCCTGTATTTTGTGTTCAAAGGAATACTGATATCTGCACCGTGCTAGGGGagtgtgtgacacacacacattgctgtACCCCTGAATGGTCCTGAAGCTACGAACTTTTAGACTGAACGCTCCACCTCCAAGGAAAATGCCTGTTCCTGATTGGCTAATCAACCAGAAGAACTAATTCATGAAGAGTGTCTGTGATTTTTCTTCCGCTTGTGTTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304230 lncRNA downstream 89161 11615798 ~ 11617512 (-) True G1143588
TU1304203 lncRNA downstream 133854 11566074 ~ 11572819 (-) True G1143568
TU1304149 lncRNA downstream 220659 11480392 ~ 11486014 (-) True G1143521
TU1304144 lncRNA downstream 232143 11473937 ~ 11474530 (-) True G1143517
TU1304106 lncRNA downstream 317609 11388863 ~ 11389064 (-) True G1143485
TU1304306 lncRNA upstream 34121 11746462 ~ 11749253 (-) True G1143643
TU1304317 lncRNA upstream 47261 11759602 ~ 11762332 (-) True G1143652
TU1304324 lncRNA upstream 60706 11773047 ~ 11773540 (-) False G1143657
TU1304326 lncRNA upstream 60706 11773047 ~ 11773540 (-) True G1143657
TU1304351 lncRNA upstream 119404 11831745 ~ 11832405 (-) True G1143682
XM_036942335.1 mRNA downstream 212302 11447021 ~ 11494371 (-) False LOC118938427
XM_036942341.1 mRNA downstream 260021 11434632 ~ 11446652 (-) True LOC110485550
XM_021556653.2 mRNA downstream 277251 11425756 ~ 11429422 (-) False LOC110485554
XM_036942318.1 mRNA downstream 347532 11323643 ~ 11359141 (-) False LOC110485558
XM_036942319.1 mRNA downstream 368569 11323643 ~ 11338104 (-) False LOC110485558
XM_036940204.1 mRNA upstream 1117 11713458 ~ 11722106 (-) True LOC110485529
XM_036940202.1 mRNA upstream 11385 11723726 ~ 11732445 (-) False LOC110485542
XM_036940203.1 mRNA upstream 11385 11723726 ~ 11732449 (-) True LOC110485542
LOC118938530 mRNA upstream 24023 11736364 ~ 11737076 (-) True LOC118938530
XM_036940207.1 mRNA upstream 85561 11797902 ~ 11811263 (-) False LOC110485539
TU1304109 other downstream 212333 11455574 ~ 11494340 (-) True LOC118938427
TU1304123 other downstream 277308 11427690 ~ 11429365 (-) True LOC110485554
TU1304064 other downstream 424581 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 547412 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 884306 10820424 ~ 10822367 (-) True LOC110494931
TU1304298 other upstream 88129 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 88129 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 88129 11800470 ~ 11811231 (-) True LOC110485539
TU1304416 other upstream 239254 11951595 ~ 11952568 (-) True G1143743
TU1304446 other upstream 330767 12043108 ~ 12081882 (-) True G1143771

Expression Profile