RNA id: XM_036940204.1


Basic Information

Item Value
RNA id XM_036940204.1
length 2093
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110485529
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11713458 ~ 11722106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGCATAATATTTATTGCGCAAgtcttttacattttattttaaacttTAGGTTCCACAAACCTATTAAAACGAAAAGTGGGAGGTCAAATATGACAGTTATGAGGCAACAATGTTGCTGTTTGATCATGTGAATAGGATGTTGTGAAACTACGCTAACGATTTCAAATGTTGCCACTGAATTATTTTGTGTCTTGCTTCTGCATAGACTGAAGAAGGAATGTCAAGACTATCTTCGGTGGAGTCCCGTGTGCCGATCTGTCACAGTTTGCAGCCAACTTGAACAATATTGAGACGTCTTTCCAAGCTTCGTTGGCCTATTAAGAAATGTTAACTTTATGACAGTGTTAATGCACTGTTGTCTGTCCAACAGCATAGCAGAAGTGTTTTGAACAGTCCACACCGCAGAATTGTGAGTCAGTGACCGTATGGATTCGGCGCAAAAATGCTTCAACTCGGAGACGAAATCGCCCTATTCTCTGTGGTGTTCGCGTTCGTTCTCCTCGGAACACGGAGCCCGATATGGTCCACCGCCCTCACCGCCTGCCTCTATGCCTTTCTGATCATGTTCCGTTTTCCCCAAGTCCCGACCAGCCGGGCGAGACAGGTGCTTCGGCCCGCTAAGAACGCTGCTTCGGGTGGGGTGTCCCTAGTCGCTCACCGGGGTGGAGGGCATGATGCGCCGGAGAATACCATGGCTGCCATCCGGGAGGCACATAAGAACGGGGCGACCGGCGTAGAGCTGGACTTGGAGTTCACATCAGATGGAGTCCCTATTCTGATGCACGATGAGACTGTAGACCGAACCACCAACGGGTCGGGACCCCTCACACAGCTAAGCTTCTCTGGGCTGTGTAAACTGGACGCTGCCGCTAAGCACCGACTCCGTGACAAGTTCCAGGGAGAGAAGGTCCCCACTCTGCAGGAGGCTGTGGAGGAATGCATCAAACTGCAGCTCACCATCTACTTTGATGTCAAAGGTCACCCAGATGAGgcagCGGCAGCCCTAAAGGAGATGTATCGGAAACACCCTGTGCTTTACAACACCAGCATCGTCTGTTCCTTTGAGCCCAAAGTCATCTACAGGATGCGTCAGGCTGACCCGGAAGTGGTGACGGCGCTGACCCACCGGCCATGGAGCCTTAGTCGGTTGGGTGACGGCACGCCGCGCTTCTCGTCGTTATGGAAACACCACTGTATGCAGGTGCTAGACGTGATACTGGACTGGGCCCACCACCACCTGCTCTGGAACCTCTGTGGCGTCTCTGCCTTCCTGGTGCAGAAGAACTTCATATCACTGGACTATGTCCAGTACTGGGCTCAGAGAGGGGTTGAGGTGGTGGGCTGGACAGTCAACACAGTTGAGGAGAAACAATACTACCAGGAGATACTCAACATCAACTACATCACTGACAGCCTACTGGAGAACTGTGATCCTCACTACTGAacagacatcacacacacagaaacctgcacaaaacacacacacacactgaagcgaGTTAAAATCCCATATTGGACACATACGGCTTTAACCCTGTGTTACTTATCTTACTGTGTATTGTATGCCCGAGACACGATACAAATATTCAGTCCAGTACAGAGCCTTCAACTTACAGGGCGACTTCATTTAGTGAACAACATGGCTCCATGTTCACCTATGTACTGTGATAACCAACTCAGGAGTGTACCTACTGCAcagttacattttagtcatttagacaCTTTTATCTAGGGAGATTTACactagtgagtgcatacattttcataatggtcccccgtgggaattgaacccacaaaccctggtgttgcaagccaccatgctctaccaactgagccacacgggaccacaGCTCGTACATATGTCATATTTTGAATCTATGACCATTCCCATTGTCAAGGATCTGTGTAAATATGAACAATTCATTCTCAGACAGTGCAATAATGTGCTTTTCTGAAGGGATAGTCTAACTGGAATaaggaaaagtatgtgggcaTCCAACCAGCTTCCAATGAAATACTAACCTAATAAGATGCATTAACTTGAATGAAATAATCTTTTAGGAATGGAAAAATAAACAAGTATGGATGAAG

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K19179 GDE1; glycerophosphoinositol glycerophosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304282 lncRNA downstream 1117 11706673 ~ 11712341 (-) True LOC110485537
TU1304230 lncRNA downstream 95946 11615798 ~ 11617512 (-) True G1143588
TU1304203 lncRNA downstream 140639 11566074 ~ 11572819 (-) True G1143568
TU1304149 lncRNA downstream 227444 11480392 ~ 11486014 (-) True G1143521
TU1304144 lncRNA downstream 238928 11473937 ~ 11474530 (-) True G1143517
TU1304306 lncRNA upstream 24356 11746462 ~ 11749253 (-) True G1143643
TU1304317 lncRNA upstream 37496 11759602 ~ 11762332 (-) True G1143652
TU1304324 lncRNA upstream 50941 11773047 ~ 11773540 (-) False G1143657
TU1304326 lncRNA upstream 50941 11773047 ~ 11773540 (-) True G1143657
TU1304351 lncRNA upstream 109639 11831745 ~ 11832405 (-) True G1143682
XM_036940206.1 mRNA downstream 1123 11706574 ~ 11712335 (-) False LOC110485537
XM_036942335.1 mRNA downstream 219087 11447021 ~ 11494371 (-) False LOC118938427
XM_036942341.1 mRNA downstream 266806 11434632 ~ 11446652 (-) True LOC110485550
XM_021556653.2 mRNA downstream 284036 11425756 ~ 11429422 (-) False LOC110485554
XM_036942318.1 mRNA downstream 354317 11323643 ~ 11359141 (-) False LOC110485558
XM_036940202.1 mRNA upstream 1620 11723726 ~ 11732445 (-) False LOC110485542
XM_036940203.1 mRNA upstream 1620 11723726 ~ 11732449 (-) True LOC110485542
LOC118938530 mRNA upstream 14258 11736364 ~ 11737076 (-) True LOC118938530
XM_036940207.1 mRNA upstream 75796 11797902 ~ 11811263 (-) False LOC110485539
XM_036940208.1 mRNA upstream 151875 11873981 ~ 11875822 (-) True LOC110485534
TU1304109 other downstream 219118 11455574 ~ 11494340 (-) True LOC118938427
TU1304123 other downstream 284093 11427690 ~ 11429365 (-) True LOC110485554
TU1304064 other downstream 431366 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 554197 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 891091 10820424 ~ 10822367 (-) True LOC110494931
TU1304298 other upstream 78364 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 78364 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 78364 11800470 ~ 11811231 (-) True LOC110485539
TU1304416 other upstream 229489 11951595 ~ 11952568 (-) True G1143743
TU1304446 other upstream 321002 12043108 ~ 12081882 (-) True G1143771

Expression Profile