RNA id: XM_036940203.1


Basic Information

Item Value
RNA id XM_036940203.1
length 2436
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110485542
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11723726 ~ 11732449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTATACCGGACGATTTCGCACTGCCCCCCACCTCCACACCCGCTTCTCTAAATGGCTGTGGTTGAGATATAAAGGACTGTTGTGGAGTAAGGACGATGGCATACAGTCTTGTGGTTCCACCTGCATCACATTTTCACACTTCCACACTACAGCGGTAGCTGAGGAGCATGGCCTCCGGTATTCTGAGCCGCCATCTTGCTTCCTCTCTGAGACCCAGCCGTGGGTTGTCTGCTTCAGGACACCGCCATCAACAAACAACCGCTAAAAGAGTTGAGGAAGTTGAGTTTGATGGTCCTTGTATGAAGACGGAGGTTCCAGGTCCCAGATCTAAGATCCTAGCACAACAACTGGAGAGTATTCAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACTTCTTCTGTGACTATGAGGAGAGTAAAGGCAACTACTTGGTGGACGTGGATGGGAACCGCATGCTGGATGTCTACACCCAGATCGCATCCATACCCATAGGATACAATCACCCGGCACTCACAAAAGTCATGGCGGATCCGAAAAATATGGGAACGTTTGTCAACCGACCAGCTCTTGGGATGATGCCACCAGAGCAATTCTCTGAGAAGCTTGTCAACGGCCTGATGGCAGTGGCACCCAAGGGCTTCAGTCGGGTCCAGACCATGGCCTGTGGATCCTGCTCCAATGAGAACGCCTACAAAGCCATCTTCATCTGGTACAGAAACAAGATGAGAGGAACTCCGGAACCAACTCCAGAGGAAGTCAGAACTAGTGTCATCAACCAGGTTCCTGGCTGCCCTGACCTGACTCTTCTGTCCTTCATGGGCGGATTTCACGGAAGAACTCTGGGCTGTCTGGCCACCACTCACACCAAGGCCATACAGAAGCTAGACGTGCCGTCTTTTGACTGGCCCATCGCCCCCTTCCCCCAGCTGAGGTACCCCCTGGACCAGTTTGAGAGGGAGAACGCACGGGAGGAGGCACGCTGCCTGGAGGAGGCGGAGGACCTGATAGTGAAGTGGAATCAGAAGGGTCGGCACGTGGCGGGGGTGGTGATCGAGCCAATCCAGGCAGAGGGAGGGGATAACCACGCCTCCTTCGACTTCTACAGGAAGCTCAGGGGAATCACCAAGAAGCATGGCTGTGCCTTCCTAGTGGATGAGGTGCAGACAGGGGGTGGGTCTACGGGGAAATTCTGGGCCCACGAGCACTGGGGATTGGACGACCCCGCTGACATCGTCTCCTTCAGCAAGAAGATGCTGACAGGAGGATACTACCAGAAAGATAGCTTTCAGCCTGacaagCCGTTCAGGATCTTCAACACGTGGCTTGGAGACCACACTAAGAACCTGTTGCTGACTGAGGTCATAAAGGTCATCAAGACAGAAAACCTGCTGGACCAGGCCAAGAGGTCAGGCAAGGTCATACTGGAGGGACTCTACGACCTACAGGATAAGTACCCCCACTTGCTCAGTAAAGCGAGGGGCATCGGAACGTTCTGTGCCATCGATGTTAAGGATGAAGACACACgcaacctcctcctcctcaaggCCAGGAATAAGGGTGTGGTTCTAGGGGGCTGTGGAACCCAGTCTATCCGGTTCCGACCAGCTCTGGTGTTCACGGAACACCATGCTCATCTCTTCCTGGATATCTTTAATGACGCAATCGCTGAGCTCAAGTAGAGTCTACACAGGAATCCAATGTGGCCCTGCTCAAACAGACCCATACTGTCAATCTGCAGTGAAGAGGTTGACACTCctccaatcaatcaaatgcatttacaaagcccttttaacatcagctgatgtcacaaagtgcttttacagaaatccagcctaaaactcgaaacggcaagcaatgcagatgtagaagcacggcgtctaggaaaaactccctagaaaggcaggaacctaggaggaaacctagagaggaaccaggctctgaggggtggccagtcctcttccggctgtgctgggtggagatgaAGGGTatatggccattaaggccagatggTTCTTCAAGATCTTCATAGACGACCATCAGGGTATACACTCCTGTATATTATTGTACATTATTTCACTCCAACTCTTTTATGAAAATTATTTCCATAAATGACTGTGGGATGATTGATTGCAATGGACTTTCTGAAGGTCAAATAACTGTAGACATTTTCTGCAGAGTGTTTTGTGTACTGTACCTTAAAATAAACCTGTCAAATATG

Function

GO:

id name namespace
GO:0009448 gamma-aminobutyric acid metabolic process biological_process
GO:0003867 4-aminobutyrate transaminase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304282 lncRNA downstream 11385 11706673 ~ 11712341 (-) True LOC110485537
TU1304230 lncRNA downstream 106214 11615798 ~ 11617512 (-) True G1143588
TU1304203 lncRNA downstream 150907 11566074 ~ 11572819 (-) True G1143568
TU1304149 lncRNA downstream 237712 11480392 ~ 11486014 (-) True G1143521
TU1304144 lncRNA downstream 249196 11473937 ~ 11474530 (-) True G1143517
TU1304306 lncRNA upstream 14013 11746462 ~ 11749253 (-) True G1143643
TU1304317 lncRNA upstream 27153 11759602 ~ 11762332 (-) True G1143652
TU1304324 lncRNA upstream 40598 11773047 ~ 11773540 (-) False G1143657
TU1304326 lncRNA upstream 40598 11773047 ~ 11773540 (-) True G1143657
TU1304351 lncRNA upstream 99296 11831745 ~ 11832405 (-) True G1143682
XM_036940204.1 mRNA downstream 1620 11713458 ~ 11722106 (-) True LOC110485529
XM_036940206.1 mRNA downstream 11391 11706574 ~ 11712335 (-) False LOC110485537
XM_036942335.1 mRNA downstream 229355 11447021 ~ 11494371 (-) False LOC118938427
XM_036942341.1 mRNA downstream 277074 11434632 ~ 11446652 (-) True LOC110485550
XM_021556653.2 mRNA downstream 294304 11425756 ~ 11429422 (-) False LOC110485554
LOC118938530 mRNA upstream 3915 11736364 ~ 11737076 (-) True LOC118938530
XM_036940207.1 mRNA upstream 65453 11797902 ~ 11811263 (-) False LOC110485539
XM_036940208.1 mRNA upstream 141532 11873981 ~ 11875822 (-) True LOC110485534
XM_036940209.1 mRNA upstream 159724 11892173 ~ 11905736 (-) False LOC110487235
XM_036940210.1 mRNA upstream 159724 11892173 ~ 11905783 (-) True LOC110487235
TU1304109 other downstream 229386 11455574 ~ 11494340 (-) True LOC118938427
TU1304123 other downstream 294361 11427690 ~ 11429365 (-) True LOC110485554
TU1304064 other downstream 441634 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 564465 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 901359 10820424 ~ 10822367 (-) True LOC110494931
TU1304298 other upstream 68021 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 68021 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 68021 11800470 ~ 11811231 (-) True LOC110485539
TU1304416 other upstream 219146 11951595 ~ 11952568 (-) True G1143743
TU1304446 other upstream 310659 12043108 ~ 12081882 (-) True G1143771

Expression Profile