RNA id: LOC110487266


Basic Information

Item Value
RNA id LOC110487266
length 1073
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110487266
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 12416017 ~ 12448563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGTaatggggttcaggtggggccagtctcccaggtagtggaggagatgtccaCTATGAGTaatggggttcaggtggggctagtctcccaggtagtggaggagatgtccaCTATGAGTaatggggttcaggtgacggtggggttagaccagctgaGTGTGAAGAAGCGTTTCCATTTGAGGAAATGTGTTACTGCTGTCACGGCAGCAAAGGGTAATGGGAAACGTGTACACAGCAAACTCACTTGGATTACATTGGCTTTGAGGCGAGCCTTGCATTTTGTTTTCAAAGTGGGTGACAGAAGCAAAACGGCCACATTTTTACCCAGATGTGCTCGGCATGAAGATTTGGCGTCACAATATTTGCGTTACAAAGAGTTTAAAGAAGGCATCTTGTAAGGGCCCTTATGATGGAAAATGGACCAAGACAATGGTCGGCTTTGGGCCAGAGGATGATGACTTTACGGCTGAACTGATCTACAATTATGGAGTAGGAGGATATCGCCTAGGCAATGACATCCTCGGTTTAACTCTGCAGTCTAGCCAGGCTGTCAGCAATGCTAAGCGGCTTGGTTGGCCCCTCACTGAGGTTGGAAAGGGCCTCTGGCTGAGGCCCCAGGAGGTTATCGCTTCTTCTGGACAAAGAACAGCCTCCCAATGATCCTGTACAGAAGGTGTGTCTGGCAGGGTCTGACCTGCAGAAATCAATACGCTGCTCCTCCCTTCTGGGGAtgaaggtgaaagagagaaatGAGGATAAGAAGACTGTGCTGATGGGATTCACAGACACTCCGTGTAAACTAGAGATTCACAACATTGTTGGGACTGTAGATCATGGGACAGCCTTCGAGTGGATAGCATTCTAGTGTCCATGTGAGCAGTTGGCAGATCGTGAACCCTTGATGACAAAGGGAAACCACAAAATCCTTACTCTCTTGGTTAGCCTGGAAACCCCTGGGAAGGCTACAGTTGAAGTGTTGTACAACCTGAGTGTGTACGGGGCCATGtacagggagaggagtgagagagtcaGTTGTCCGTGTGAGTTGCTGCGTGGAATGCTGATGAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304989 lncRNA downstream 55738 12358008 ~ 12360279 (-) False LOC110485629
TU1304984 lncRNA downstream 66988 12347792 ~ 12349029 (-) True G1144194
TU1304976 lncRNA downstream 80457 12335334 ~ 12335560 (-) True G1144188
TU1304975 lncRNA downstream 81027 12334765 ~ 12334990 (-) True G1144187
TU1304974 lncRNA downstream 82294 12333121 ~ 12333723 (-) True G1144186
TU1305001 lncRNA upstream 51000 12499563 ~ 12503669 (-) True G1144198
TU1305125 lncRNA upstream 142918 12591481 ~ 12592128 (-) True G1144318
TU1305126 lncRNA upstream 145053 12593616 ~ 12594366 (-) True G1144319
TU1305128 lncRNA upstream 148277 12596840 ~ 12597109 (-) True G1144321
TU1305129 lncRNA upstream 148772 12597335 ~ 12597693 (-) True G1144322
XM_021556731.2 mRNA downstream 55687 12358853 ~ 12360330 (-) False LOC110485629
XM_036940214.1 mRNA downstream 477591 11906902 ~ 11938426 (-) True LOC110485617
XM_036940211.1 mRNA downstream 487456 11906902 ~ 11928561 (-) False LOC110485617
XM_036940212.1 mRNA downstream 487456 11906902 ~ 11928561 (-) False LOC110485617
XM_036940210.1 mRNA downstream 510234 11892173 ~ 11905783 (-) True LOC110487235
XM_021556737.2 mRNA upstream 263121 12711684 ~ 12720418 (-) True LOC110485637
XM_036940241.1 mRNA upstream 273979 12722542 ~ 12735288 (-) False LOC118938209
XM_036940244.1 mRNA upstream 273979 12722542 ~ 12743403 (-) False LOC118938209
XM_036940240.1 mRNA upstream 273979 12722542 ~ 12743575 (-) False LOC118938209
XM_036940242.1 mRNA upstream 273979 12722542 ~ 12744218 (-) False LOC118938209
TU1304992 other downstream 49732 12359015 ~ 12366285 (-) False LOC110485629
TU1304991 other downstream 50249 12359015 ~ 12365768 (-) False LOC110485629
TU1304990 other downstream 55738 12358393 ~ 12360279 (-) False LOC110485629
TU1304988 other downstream 55738 12358856 ~ 12360279 (-) False LOC110485629
TU1304995 other downstream 55738 12358856 ~ 12360279 (-) False LOC110485629
TU1305143 other upstream 166413 12614976 ~ 12615495 (-) False G1144335
TU1305145 other upstream 166556 12615119 ~ 12615559 (-) True G1144335
TU1305149 other upstream 169396 12617959 ~ 12618158 (-) True G1144338
TU1306029 other upstream 676307 13124870 ~ 13126598 (-) True G1145035
TU1306063 other upstream 716951 13165514 ~ 13171157 (-) False LOC110485655

Expression Profile