RNA id: XM_021557233.2


Basic Information

Item Value
RNA id XM_021557233.2
length 4735
RNA type mRNA
GC content 0.46
exon number 11
gene id trim25
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22580737 ~ 22596273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cTGCGGATAAACCCCACCGAAGAAGAATCCACAGACAGCTACTCAGATCTCGGACAAGTCAAGGGACGTAGAATACGTTTGTCAGCTGTCAGTGCACTTTACAGCCTGgtttcCATACAAAGGTGAAGTCGTCATTTCTGCTGTTGGCAGGATAGTAGTTTAAACAGAACACTCACAGACAACACAGCAGCAGACAGTTGTAGTTCCATCATGGCGGAGGATATGTTTTCCCTCATGAGTCTCGAAGACGAACTGAGCTGTAGCATCTGCCTCTGTGCTTTCGACTGTCCGGTGACAATTCCATGTGGACACAACTTTTGCCAAGAGTGTCTCCTAGAAACCTGGAAAGACAACTACAGCTGTCCACAATGCCGGACCCACTTCACCACCAAACCAGAGCTGAAGAAGAACACCGTTCTCAGCACTGTTGTGGAAACGTTCAAAATGAAGTCGAATAAAAGCGACCTCCCCAGTGAGGTGGGCGACTTAATCAAGTGGGATGCGGTCAAGATGGAGCCCAAAGAGGTGGCTATCTTGTGCGACACCTGTATGGAAGCCAAAGCATTCAAGACCTGCCTCACCTGTATGGCGTCATTCTGCCTTGAGCACGTGAGGCCTCATCATGAGAACCCAGTGTTTGGCGCGCATCAGCTGAACGAGCCTCTGGGCGACCTGCGCGACCGTATCTGCCCCGACCACCACAAGCTGATGGAGTTCTACTGTGTCCAACATGGCCGCTGTATCTGTGGTGTCTGTCTGCAGCAGGTGCATAAAGGCTGTACCTTCTCCAACCCTGATGAACAACGGGCACTGCAAGAGTCTGATTTGAGGGGCAAGTTGAGTATGCTGAATGGAAAGATTGACAAGAACCAGACTGTCATCTCTCAGATGAGTGACCAGCAGAGCAAGTTGAAGGACTCTGCAGCCAGCAGGAAGAGAGCTCTGGAGGACGAGTACCGCCAAATCCGGGAGCTGCTGGACCGTGATGAGCGTGAGGCTCTGAACACCGTGGACCGCGAGCAGGAGAGCGCTCAGACCAAACTCCAGAACCTCATAAAGAAGTTCAACCAGAACATTGCGAAGCTTAGTGCGGCAAAAGATGGCGTCGACAGCCTGCTCAGTCAGACTCAGACCGTGGCTTTTCTACAGGCCTCAGTTGACATGCCGGCAGCGGTGGCCTTTGACCCCTATACCCCGAAGGTCAACCTGGACTCTAAGGCCTTGGCAGCCTGGCATGCCTACTCTGCAGTCCTGAGGGAGCATCTCACATTTGTACTGAAACAGCCTGTAGAGGCCAGACTGCAGATACtcaaaccagCTGAGAGGTTTGCTCCTCCTCTGCTGCCAAACTTCTATGAAATGGGAGGCATGCCACCACCAGGTCACCAGAGAATGCCTCGATCCCACAGCCCAGGAGCCCCCCTCAGGGCAAACCAGAGGAAGAAGCCTCCACAAGATTCAAACCGAGAGAGAAAGTCAGACAAGAAACGAGATCACAAAGAAGGGAAAGAACATAAGGCTGACAAAAATCCCCAAAAGCCACCTAATGCTCCCAGAGAGTTTGCCACTCCTGTTCCACACACACCAAGGGACCACCCCAGAGGACAATCAGCAGAACCCAGACCCAGGAACAGGGAGGACCCAGGACAACCAAGTGTTCTCCCAAGTATCACGTCTGCAGCAAAACGAAATGACCTTCTGCAATATGGCACGGTTCTCACCTTTGACCTCAAAACAGCCCACAAGCGCATCTCCCTCACAGAGAACATGACCGTGGCCTCTGTGTCAGACGAGCCCACCCCTTACCCCGATGGCCCCGCCCGTTTCTCCGTCTGCAGCCAGGTGCTCACTTCCAAGGGCTTCTCCCGCGGCCGCCACTACTGGGAGGTTAAGATGAGCAGCAACAACTTCACCGGCATCGGCCTGGCCTACAACAGCATCGACCGGAAGGGTCCGGCTAGCCGGCTGGGGCGTAACGCCCAGTCCTGGTGCGTGGAGTGGTTCAACGTCAAGCTGTCGGCCTGGCACGCCAGCAGTGAGACTGTACTGCAGAACCCGAATCCGACCCGCGTCGGCGTGCTGCTGGATTGCGAGGAGGGAACGGCCACTTTCTATAACGTACAGGACCGGGCATACCCGTTCCATACGTTTGTGTTCCAGTTCGCCGAGGCAGTGTACCCGGCGTTCTGGCTCTTCTCCAGCGGCTCGTCTGTTAGCCTGTGCAAGCTGCAGTCTTGAGAAGTTAACACACATTCTTCTCCCTCGCAAATAATTAGAATATACAGCCTCTGGGTCAATAAATGACTTAATCATACTGATATTGGGAACTTGTATCTTAAAGGTTATTATTTGGTTGTAGTTACTGGCTTTAGTAATAATGCAGTGTAGGTCATATCATTTTGGACTTTGGTCTCTTGTAACTGCAGCAACCTCTAAACAGGCAGCATTTGTTAATCAGTAACTAATGAAAACTAAGCACTTGCATACAGGTAAAGGAACATTACAAATTATTGTACAATATTATTGTATTGTCAAAAGCATGATTGACATCCTTactaccttttttttttactgctgttGTGATGTCAGCAGCATGCCGTGAAAGGAATTGATTTATTCCTTAATGGTTCATCAGACATAGCGAGTTACATTGGCTGGATAGAAGGAATTAGCTGACATTGTGATCATTCATGTCTGATTCGCAAGTGGTTACGTGACGTGCTATAGGCACGACTTACAAACAGAACTACTAAGTGGTATTTGAACCAGGCGAATGAGTTCTTTCTCCGGCTCTGCAGTCCTGGCTAAATGTCTTGATCATCCAGTTTATTTACAGATACATTTAAGTGGTCTGTGGGTAGCTGTTTACAGCCTGTTTTATCAGAGCTTATGATCTCTTGGTGTGGGTCTTGGCAGTACACAGTAATCACATGTAATATGCACAAAACGACATGAATAAACATGTTTAACATGTATGTTATCTGCTGTATGTGAACAGTACCACAACGTTCAGAAGGCCATGTACTGGCACACCTATTGCAAGAGTGTGGATGGCTTTTGCAGGTGTTAGGCATCCCCGCATTAGGGAATGTCATATCCAATAACACCACTGGATATAGAGAATCAATGAATCGAACAGAAAAGCATCCACATTATTCTTGATACCCCCAAAGGAAAAGTGGGTATCGTTCCCTTTTTTTCTTGATCTAATACATTTCGCTACAGTGTTTCACATAGAGCCTAGAAGTGAAGGGGGTGCAGTGTGAGGATGTGCTGAAAGTGCTTCCTGACACTGCTACTAGGACATTGCTACTACAGGCTTGATAGAACCTAGCCTGGTTGCCAGATCTGCATTTGTTTTAGAATTACAGTGAACAGGGCAGAGGAGTTGGTTGATCTGGCAACCGGGCTAGATAGACCCAGCCTGGCCCATAAGAACAAGCAGAGGTCATTTAGACCCTGTGAACAGGAGTTGTTCCAACTCTGTGGGTTTTGTAAATAGGGATGATTTAGGGCTGGGGTTTTTCCTGTCTGTGACCAGACAaaagaaaaactctgggcccAAGTTATAGCTAATTTAGCTACATATCTGTAGCACAGTGATGGTCTGTTGGTGTTCGTTTGGACATCTGTGGGTGTCACATTGTCTGTAACGTGGGTGCATGCTTCTCATAATTCATGCCTCTGATATTGTGGATTGGAACTTTTCCATTTATGGACAGACAGCCATCGCTACGATCGGAGAGCAAGTTGAGAATAGCATGTGATGGATTAGTTTTGCTTTGCAAAGCCCAGTGCCAAATGAATAGTTGGTGTCATTGCCTTCTCCCGCTATAGAAACACTAGTTTTCCTGATTTAAGGGATTTTGACTGTTAGTGGAATGAAGGCAAGCTGATATTTAAGGAAAAGATGAATTCATTTGCTGGATTTAAGCCATTATTGCCACTGGCTTTTTAAGAGATCCCCAAAGGTTTGGACAAAGTCCGAACGACTCGCGTACACAACACCAGATAGAGCAAAGATCAGAGGGCCATTGTCATGGTCCTTGTGTGTCAGCACGTTATCCTCTCTGTCCATTCCTTCCGTCTTATAAGCTCGGTTCTTAATTAATGTGCTGATGGTGTACTTCGTGTTGGTTTGGCTTACTGACTTTGTTTGATCGAGTCTTGTTTAACTGAAAAATATATTAGAAATTGTTGGTTGTGTTTTAAAGGGTAAGGTATTGATTCTGTTTGTGTATAAGGGGTTTAATCTGGTTAAAGACAACTTGATAATGTCCCCTCGTGATTTACTATTAGAAGGTATTTTGTGCTAATGTATTCCTCCAAAAATGTATCACATACAAATACATATAGTTACTAatgtgtgtggtgggtgtggcTTATTTGTTCCACATGTCTAGACACGTATATATACTGCATTTGGGGATTATATTACTTCAAACTGCTCAGGAGTAGACATACCGCAAGTGCACGGGAAGAAAAAACACTTGCTTTTCATATTATATACATGTAAAACAATGATTCATAATAAATATGAAAATATTTATTGATGTTTCCAAATCCTAATTTACATTGCTTATTACATTCAGTGAAATGATCCGTTTCAACATCTGTAGTAGCAAATTCAGTAAAGCCGATTTTATTTTCATCTTTATGTCTCTTAAATGTTCCTCTGTTTTTTAATTGCTTTAACGTGATTCATTGTTTGCTTACAATAAAAGTCATTTATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1316598 lncRNA upstream 6347 22574107 ~ 22574390 (+) True G1154445
TU1316596 lncRNA upstream 9753 22570784 ~ 22570984 (+) True G1154443
TU1316589 lncRNA upstream 35369 22545035 ~ 22545368 (+) True G1154436
TU1316587 lncRNA upstream 39799 22540454 ~ 22540938 (+) True G1154434
TU1316583 lncRNA upstream 46757 22533069 ~ 22533980 (+) True G1154430
TU1316637 lncRNA downstream 60908 22657181 ~ 22657423 (+) True G1154480
TU1317019 lncRNA downstream 71619 22667892 ~ 22668152 (+) True G1154818
TU1317022 lncRNA downstream 74337 22670610 ~ 22670828 (+) True G1154821
TU1317052 lncRNA downstream 106512 22702785 ~ 22703392 (+) True G1154850
TU1317064 lncRNA downstream 125869 22722142 ~ 22722360 (+) True G1154861
XM_021557229.2 mRNA upstream 11929 22554662 ~ 22568808 (+) False LOC110485964
XM_021557230.2 mRNA upstream 11929 22554662 ~ 22568808 (+) False LOC110485964
XM_021557232.2 mRNA upstream 11929 22557850 ~ 22568808 (+) False LOC110485964
XM_021557231.2 mRNA upstream 11929 22557851 ~ 22568808 (+) True LOC110485964
LOC110485110 mRNA upstream 38491 22534050 ~ 22542246 (+) True LOC110485110
XM_021557237.2 mRNA downstream 9983 22606256 ~ 22610371 (+) False c13h17orf67
XM_036940643.1 mRNA downstream 484390 23080663 ~ 23325301 (+) True LOC110485978
XM_021557252.2 mRNA downstream 733961 23330234 ~ 23353922 (+) True LOC110485983
XM_021557253.2 mRNA downstream 770932 23367205 ~ 23391112 (+) True LOC110485984
XM_036940645.1 mRNA downstream 806123 23402396 ~ 23441245 (+) False LOC110485985
TU1316561 other upstream 68997 22511379 ~ 22511740 (+) True G1154412
TU1316478 other upstream 124388 22439636 ~ 22456349 (+) True G1154335
TU1316357 other upstream 421308 22158571 ~ 22159429 (+) True G1154234
TU1315702 other upstream 971908 21607492 ~ 21608829 (+) True G1153651
TU1315031 other upstream 1366125 21211712 ~ 21214612 (+) True LOC110485931
TU1316606 other downstream 10035 22606308 ~ 22610279 (+) True c13h17orf67
TU1317231 other downstream 362659 22958932 ~ 22959351 (+) True G1155006
TU1317569 other downstream 915653 23511926 ~ 23571780 (+) False pitpnc1a
TU1318207 other downstream 999645 23595918 ~ 23599003 (+) True LOC110485992
TU1318398 other downstream 1402373 23998646 ~ 24003968 (+) True G1156089

Expression Profile