RNA id: XM_021557237.2



Basic Information


Item Value
RNA id XM_021557237.2
length 1038
RNA type mRNA
GC content 0.44
exon number 3
gene id c13h17orf67
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22606256 ~ 22610371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATCGGTTGACGTAAGAGGAGAATTTACCCCCTCATCTCCTACGGACTGGGGTCTCAGTGCAGAAGTAGCCGGGCAGGAGAGCTGAGACCAAGATGAAGAAGTTTGTGGCATTTTCCCTCTGTCTGGTCCTCTTGACCATCTACATAGCAGATGCAAACCCAATCATCAAGGAGAGCTATGCTAAGCAACTTCTGCGGACCAAGAGGCAGAAGCCCGGCCACCCCGATGAGCCAATGAGGGAGCACTTGCTCCACATGCAGGTTCTGGATCAGAGGGCCCAGGAGACCAACCTGGAACACTGGCTGAACCCCCACTGCTACCCCCGCTGTGACAGGAACTACGGACACCCTGTCTAATCCCCAGTGACCTCGCCTTGACTCCTCACAGCCCAGGTTCCTGTCTGTCCAACACAACCATAAAACATGCCTGCTTGGGTCCCCTGGGGCTTTTTGAGTAGGGAACAGGGTAGCAAAATGCAGTGTAACAAAAAAAGTACCAGAAAGTACATCATTTCACTACATTTCAAAAACATTTGAACACAATGTACAGTACCTATAATTAGCCTATTGGCTGATCAGTTTTGTATTTCCCTCTTGATTGGTTACAGTTAGAATTGGGGTAAACTGATTCTaggtcttttttttttgttgtcttctGGCGAACAACTTTTTCTGTGTGGCAGAAGGCGTTGACGGCAAGAAGGATGTTGAAAACTGTGATGacgacaatgatgatgatgaccatGATAATGATATGAGGGTGAAGCTCAGAGTGTAACTCTGTCACATGCATTTCATGATGAAGCCTCAGCAGGGAACATTAGTGGCCATCAGTAGATACTGGCCACAAGAGCATGATCAGCTTATTCCAGCAACATTAGCATACAGGAAACATAGAAAATGATGTTAACATCATAGAGCATACATGATCCGTTTATATGTGGATACAGTTATGAGAAAATATACATTGTATTATGTaaaacaatgtttaaaaaaaactattatttAATAAACAAtctaatcaaataaataaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1316598 lncRNA upstream 31866 22574107 ~ 22574390 (+) True G1154445
TU1316596 lncRNA upstream 35272 22570784 ~ 22570984 (+) True G1154443
TU1316589 lncRNA upstream 60888 22545035 ~ 22545368 (+) True G1154436
TU1316587 lncRNA upstream 65318 22540454 ~ 22540938 (+) True G1154434
TU1316583 lncRNA upstream 72276 22533069 ~ 22533980 (+) True G1154430
TU1316637 lncRNA downstream 46810 22657181 ~ 22657423 (+) True G1154480
TU1317019 lncRNA downstream 57521 22667892 ~ 22668152 (+) True G1154818
TU1317022 lncRNA downstream 60239 22670610 ~ 22670828 (+) True G1154821
TU1317052 lncRNA downstream 92414 22702785 ~ 22703392 (+) True G1154850
TU1317064 lncRNA downstream 111771 22722142 ~ 22722360 (+) True G1154861
XM_021557233.2 mRNA upstream 9983 22580737 ~ 22596273 (+) False trim25
XM_021557234.2 mRNA upstream 9983 22580737 ~ 22596273 (+) True trim25
XM_021557229.2 mRNA upstream 37448 22554662 ~ 22568808 (+) False LOC110485964
XM_021557230.2 mRNA upstream 37448 22554662 ~ 22568808 (+) False LOC110485964
XM_021557232.2 mRNA upstream 37448 22557850 ~ 22568808 (+) False LOC110485964
XM_036940643.1 mRNA downstream 470292 23080663 ~ 23325301 (+) True LOC110485978
XM_021557252.2 mRNA downstream 719863 23330234 ~ 23353922 (+) True LOC110485983
XM_021557253.2 mRNA downstream 756834 23367205 ~ 23391112 (+) True LOC110485984
XM_036940645.1 mRNA downstream 792025 23402396 ~ 23441245 (+) False LOC110485985
XM_021557255.2 mRNA downstream 792032 23402403 ~ 23441245 (+) True LOC110485985
TU1316561 other upstream 94516 22511379 ~ 22511740 (+) True G1154412
TU1316478 other upstream 149907 22439636 ~ 22456349 (+) True G1154335
TU1316357 other upstream 446827 22158571 ~ 22159429 (+) True G1154234
TU1315702 other upstream 997427 21607492 ~ 21608829 (+) True G1153651
TU1315031 other upstream 1391644 21211712 ~ 21214612 (+) True LOC110485931
TU1317231 other downstream 348561 22958932 ~ 22959351 (+) True G1155006
TU1317569 other downstream 901555 23511926 ~ 23571780 (+) False pitpnc1a
TU1318207 other downstream 985547 23595918 ~ 23599003 (+) True LOC110485992
TU1318398 other downstream 1388275 23998646 ~ 24003968 (+) True G1156089
TU1318573 other downstream 1716412 24326783 ~ 24328963 (+) True G1156247

Expression Profile