RNA id: TU1317569


Basic Information

Item Value
RNA id TU1317569
length 1727
RNA type TUCP
GC content 0.47
exon number 3
gene id pitpnc1a
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23511706 ~ 23591433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGACAGCCAAAGGAAGAGCTCGTCCCATTTTTTTCACATCCAAAGAGAGGACACCGCAACATAAAGCCAAGCCTTTGTAAAGAAGACTCGTATGTGCAGGAACTCAGAAGCGTGAGGAACAGCACATTTTAGCGAATTAGCCTCTGCAAGGACGGACCTGACCctcgcttttttttttttagataaaccTTGTATCTATTTCTTTTTGGTTTGAGAAAACTGCAGTTAAAGCAACTTGGCCGTTTTGTTACCGCACACGTTTTGAAAGCAACATCTGTTTGGCCGATTTTCAATCGATTCTCATGTATTTCGCAGAGGGCAGTTAGGTACGTTTTTTAACTGCTTTTCTTTACCCACGTCCTGTCCGGAATATTAAAAAAAGGCTCGTTTTTGAACGCTGCTTGTGAGAAATTCCCCAGCGAAAATTCCATTCGTTCCGATGAGACAAGACAACTCACAGTGGTCATCTGTTTTCAAGGCGATCCACATGCATTGCCAAACTCTGCGTTTTTATTAGCTAAAGCTTTGGCGGTCATAACTTGTTAGACGGGCTACATTGTAGAACAAGAAGAGCTATATCAAATAAGATGTTGCTCAAGGAGTACAGGATATGCATGCCGCTGACTGTCGAGGAGtACAGGATTGGTCAGCTATATATGATCAGCAAACACAGCCATGAGCAGAGTGACCGCGGCGAAGGGGTGGAGGTGGTCCAGAATGAACCGTTTGAGGACCCCGCCCACGGTCAGGGTCAGTTCACTGAGAAACGTGTCTACCTCAACAGtaaaTTGCCCAGCTGGGCTCGAGCAGTGGTGCCCAACATCTTCTACGTAACAGAGAAGGCCTGGAACTActacccctacaccatcacaggTGAGCGCACGCTCAACACCGGCGTCTCATTGTAGAACCAGGATCCATTCATACCAGGCACCACTAATGCTTGTGTTAGGTCAGAAATGAACTCTGACCACGTATCGACCGTAACCCTAGCGGAAATGCACCGGGCTAACCTCAACCTAATCCAGTTACTGTGGCACTGAGCTCATAGCATGGCCAGGctagctaccccccccccccccccccccacaaaaaacgTTTCTGTCCGGTCCCCATTTGGTTTTGAAATAACATATGTCCGACTATTATTCTCGTAACGTTATTAGAACGTCGGGTCAGCACCATTTCCCAGAAAAGCTTCTTCAAAAGAGCGTGGAAAAGGTTCAGCAAGCGTTTCCTGGATGTGTGAGCTGGGTTGTTTCTCGTGTCACATCGTAACCTGTCTGCGTTGCTACCGTGTTGTCGCGTCATTGAAAAGCCCTAATCTGTGTTGTGTTTTCTCCCCGCTCTGCTGCCACGCGTCCCTCCTGCGCCTGCCTCTCTAGAGTACACAGTAAGTATCCCTTCCTTTTGATTGGTCAGAGCTGTGAAGAGAGCCACCGCAGTCCAGTAGTGGGCGGGGTGTCCGGACTCATTCAATGCAGCAACATGGACGGATTGTAATTGTAATGTTTTAATATTGCATTAACTGCCTGAATTTTGCTgtaacccaggaagagtagctgctgccttggcagctaatggggatccataatacatacAAATGATGCTTTATACACTGGTAGTTCACAGGAAGTGTTAAGAACCAACATCGGTTTCAACCCATTATAAAACTCTACCGTAGCTGTGTTTTAATGTCTGAGAAGGGTTTAAGACCGATGACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1317527 lncRNA upstream 5446 23502073 ~ 23506480 (+) True G1155279
TU1317557 lncRNA upstream 12709 23498823 ~ 23499217 (+) True G1155309
TU1317542 lncRNA upstream 37484 23473667 ~ 23474442 (+) True G1155294
TU1317524 lncRNA upstream 54273 23457203 ~ 23457653 (+) False G1155277
TU1317525 lncRNA upstream 54273 23457264 ~ 23457653 (+) False G1155277
TU1317602 lncRNA downstream 825 23572605 ~ 23573275 (+) True G1155344
TU1317606 lncRNA downstream 9907 23581687 ~ 23581893 (+) True G1155348
TU1317607 lncRNA downstream 10536 23582316 ~ 23582539 (+) True G1155349
TU1317609 lncRNA downstream 11709 23583489 ~ 23583707 (+) True G1155351
TU1317563 lncRNA downstream 15270 23587050 ~ 23591387 (+) False pitpnc1a
XM_036940645.1 mRNA upstream 70681 23402396 ~ 23441245 (+) False LOC110485985
XM_021557255.2 mRNA upstream 70681 23402403 ~ 23441245 (+) True LOC110485985
XM_021557253.2 mRNA upstream 120814 23367205 ~ 23391112 (+) True LOC110485984
XM_021557252.2 mRNA upstream 158004 23330234 ~ 23353922 (+) True LOC110485983
XM_036940643.1 mRNA upstream 186625 23080663 ~ 23325301 (+) True LOC110485978
XM_021557262.2 mRNA downstream 24096 23595876 ~ 23608606 (+) False LOC110485992
XM_021557267.2 mRNA downstream 40045 23611825 ~ 23668170 (+) False LOC110485993
XR_002468019.2 mRNA downstream 40045 23611825 ~ 23668170 (+) False LOC110485993
XM_021557263.2 mRNA downstream 40045 23611825 ~ 23668173 (+) False LOC110485993
XM_021557266.2 mRNA downstream 40045 23611825 ~ 23668173 (+) False LOC110485993
TU1317231 other upstream 552575 22958932 ~ 22959351 (+) True G1155006
TU1316606 other upstream 901647 22606308 ~ 22610279 (+) True c13h17orf67
TU1316561 other upstream 1000186 22511379 ~ 22511740 (+) True G1154412
TU1316478 other upstream 1055577 22439636 ~ 22456349 (+) True G1154335
TU1316357 other upstream 1352497 22158571 ~ 22159429 (+) True G1154234
TU1318207 other downstream 24138 23595918 ~ 23599003 (+) True LOC110485992
TU1318398 other downstream 426866 23998646 ~ 24003968 (+) True G1156089
TU1318573 other downstream 755003 24326783 ~ 24328963 (+) True G1156247
TU1319586 other downstream 1192322 24764102 ~ 24764346 (+) True G1157117
TU1319792 other downstream 1529760 25101540 ~ 25105138 (+) True G1157292

Expression Profile