RNA id: TU1318207



Basic Information


Item Value
RNA id TU1318207
length 2256
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC110485992
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23595876 ~ 23608606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCGACGCTGTGTGAGGGATTCACGTTGTGCGGACTTGTACAAACTCAAAATGCTTCAGATTCGCCAATTCAGGGAATTGAACTGGATGAAGACAGTGACCATGCCGTCGTCACCGATTCCACGAGATCTGTCACTTTATACAAGGTTTCAGACCAGAAGCCTTTGGGCAGCTGGACGGTGAAACAGGGACAGTTGTTGACTTGTCCTGCAGTGTTCAACTTTCAGACCAAGGAGTATGTAGTGGTCTCCGACAACAAGGTCATCAGAGTTTGGAAAGATGAAGACCTCAATTTAGACAAAGCATTTAAAGCAACTGTGACTGCTGATGTATGGCGGGTCCACTCTGCCCCAGGGGGAGAGCCTGTGGTGCTTTTTCAGAGAGGCGCAGTCAGATTCCTGGACTCCCTCCTCTCCGCCCCCCAACAGCCCATAGAGGATGTCCTGTCAGAGGAGGAGGTCATAAGGTCAGACAATGGACACCAGTCTGGATTAGTGATCCGTAACCTTCGGGTTGGTTGGCTTTAGTCCCACCACTATAGAGGCTGGTTGGCGTATTGGATATAAATACGATAtggatataaaaatatatacagttgaagtcggaagtttacatccacttaggttggagtcattaaaactcatttttcaaccactccacaaatttcttgttaacaaactatagttatggcaagtcggttaggacatctactttgtgcatttttttacagacagattatttggcacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaattcagccaagaccccagaaagaaatttgtagacctccacaagtctggttcattcttaggatcaatttccaaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgctagtataaacaccatggtaccacgcagccgtcatacggctcaggaaggagacgcgttctgtctcctggagatggtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacgggtacaaaagtatctatatccacagtaaaacgagtcctatattgacaaaaCCTGAAatgtcgctcagcaaggaagaagtcactgctccaaaaccgccataaaaaagccagactacggtttgcaactgcacatggggacaaagatggtcgtttttggagaaatgtcttctgctctgatgaaataaaaataccaCTGTTTGGTCATGATGACCgctgttatgtttggaggaaaaagggggaggcctgcaagccaaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtgagagtgctttgctgcagagggactggtgcacttcacaaaatagatggcatcatgaggtaggaaaattatttggatatattgatgcaacatctcaagacatcagtcaggaagttaaagcttggttgcaaatgggtcttccaaatggacaatgaacccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccttggcctcaatcctatagaaaatgtgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctttgtcaggaggaatgggccaacattcacccaacttattgtggcaagcttgtgggaggctacccaaaacgtttgacccaagttaaacaattgaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgaaccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctcctattattctgacatttcacattcttaaaaataaagtggtaatcctaactgacctaaaacagggaatttttactaggattaaatgtcaggaattgtgaaaagctgatttgaaatgtatttggctaaggtgtatgtaaaacttccgacatttaattgttttattttaacctttttttatttaactaggcaagtcagttaagaacaaatgtttattttcaatgacggcctaggaacagtgggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1318200 lncRNA upstream 3768 23591897 ~ 23592150 (+) True G1155901
TU1317566 lncRNA upstream 4485 23590532 ~ 23591433 (+) False pitpnc1a
TU1317568 lncRNA upstream 4485 23590768 ~ 23591433 (+) False pitpnc1a
TU1317565 lncRNA upstream 4485 23591057 ~ 23591433 (+) True pitpnc1a
TU1317563 lncRNA upstream 4531 23587050 ~ 23591387 (+) False pitpnc1a
TU1318210 lncRNA downstream 66778 23665781 ~ 23668165 (+) True LOC110485993
TU1318261 lncRNA downstream 111324 23710327 ~ 23711035 (+) True G1155958
TU1318308 lncRNA downstream 175206 23774209 ~ 23774491 (+) True G1156004
TU1318304 lncRNA downstream 175610 23774613 ~ 23775018 (+) True G1156000
TU1318329 lncRNA downstream 269067 23868070 ~ 23868285 (+) True G1156025
XM_036940646.1 mRNA upstream 8220 23511706 ~ 23587698 (+) False pitpnc1a
XM_036940647.1 mRNA upstream 9715 23511709 ~ 23586203 (+) False pitpnc1a
XM_036940645.1 mRNA upstream 154673 23402396 ~ 23441245 (+) False LOC110485985
XM_021557255.2 mRNA upstream 154673 23402403 ~ 23441245 (+) True LOC110485985
XM_021557253.2 mRNA upstream 204806 23367205 ~ 23391112 (+) True LOC110485984
XM_021557267.2 mRNA downstream 12822 23611825 ~ 23668170 (+) False LOC110485993
XR_002468019.2 mRNA downstream 12822 23611825 ~ 23668170 (+) False LOC110485993
XM_021557263.2 mRNA downstream 12822 23611825 ~ 23668173 (+) False LOC110485993
XM_021557266.2 mRNA downstream 12822 23611825 ~ 23668173 (+) False LOC110485993
XM_021557265.2 mRNA downstream 12823 23611826 ~ 23668173 (+) False LOC110485993
TU1317569 other upstream 24138 23511926 ~ 23571780 (+) False pitpnc1a
TU1317231 other upstream 636567 22958932 ~ 22959351 (+) True G1155006
TU1316606 other upstream 985639 22606308 ~ 22610279 (+) True c13h17orf67
TU1316561 other upstream 1084178 22511379 ~ 22511740 (+) True G1154412
TU1316478 other upstream 1139569 22439636 ~ 22456349 (+) True G1154335
TU1318398 other downstream 399643 23998646 ~ 24003968 (+) True G1156089
TU1318573 other downstream 727780 24326783 ~ 24328963 (+) True G1156247
TU1319586 other downstream 1165099 24764102 ~ 24764346 (+) True G1157117
TU1319792 other downstream 1502537 25101540 ~ 25105138 (+) True G1157292
TU1320347 other downstream 1814106 25413109 ~ 25414981 (+) True LOC110486053

Expression Profile