RNA id: XM_036940650.1


Basic Information

Item Value
RNA id XM_036940650.1
length 3981
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110486000
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23728681 ~ 23754557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGAAGTCGCCCGAAATCTGGCTACATGTGACGTCACGAGATTTCCTTAGACCAAGCGGCAGCTGCTGAAGCTAGTCACAGAGCCGGGAGGACTGTCGCAGCAATTTCTGTCTACAAATGATTATTTTCGGACATTATAATTGGACGTAGCATCAGCAGCAATGGATACATCccggtttttcttcattttttatcactgactgactgttcTTTCCAAATATTTTGCTGCGTTGGAAGCACGCAAGCGCTCGAAGGGGGGGTGTCCCTAGCTATCGTTATTCGACTTGCCAGGACATGAATTTAACCACAGAAGCTGTTCCTGAACTTGAATATGATTGTGGACCCAGAATTAAATCCCTTTATTAAAAAGGCTGAGTCACCGCTGGAGTGCcttaagagagagagcgaaggaagACGTGGAGAGAAaggtagtgtgagagagagacggctaggggagtaaagacagagagtgagaggaaaaCGAGTGGCGAGGAGGTAgcagaaaggagaagagagagagagccaaggGAGTTGGGGAAAAAGAtggagtaagggagagagagagacaacacacagagacagagtgaggagagtgggtgtgtgtctgtggaagagaaagagacagcaagGTCAGGACTGctgaacccccccacccccttggGTCTGAGCGCTGGGCTGACGGTCAAGGCGACGCCACTATGAGTGACCAAAACGTTGTCAAGGAAGGCTGGGTTCAGAAGAGAGGTGAGTACATAAAGAACTGGAGGCCGCGCTACTTCCTGCTGAAGACAGACGGATCCTTCATCGGCTACAAAGACAAACCCCAGGACGCAGACCTGGCCTATCCCCTCAATAACTTCTCTGTAGCAAagtgtcagctgatgaagacaGAGAGGCCAAAGCCCAACACGTTCATCATCCGCTGTTTACAGTGGACAACGGTTATTGAGAGGACATTCCACGTGGACACGCCCGATGAGAGAGATGAGTGGGCCGAAGCCATCCAGATGGTGGCCGACTCCCTGGccaagcaggaggaggaggggatccTGTGCAGCCCCACGTCGCAGATCGAGAATGAGGTCAACGAGGAGGAGATGGACACCTCCACCAGCCAACACAAACGGAAGACAATGAATGACTTTGACTATCTGAAACTACTGGGAAAAGGCACTTTTGGGAAAGTCATTCTGGTGAAGGAGAAGGCGAGCGGAACTTATTACGCCATGAAGATCCTGAAGAAAGAAGTCATCATCGCCAAGGACGAAGTTGCTCACACCCTCACAGAAAGCAGAGTGTTGAAAAACACCCGGCATCCATTCCTAACATCTCTGAAGTACTCCTTTCAGACCAAGGACCGGTTGTGCTTTGTCATGGAGTATGTGAACGGAGGAGAGCTGTTTTTCCATTTGTCAAGAGAGCGAGTGTTTTCCGAGGACCGCACGCGATTCTACGGAGCTGAGATCGTCTCCGCTTTAGACTACCTTCACTCTGCCAAGATAGTGTACCGCGATCTGAAGCTGGAGAACTTGATGCTGGATAAAGACGGGCACGTCAAGATCACGGACTTCGGCCTCTGCAAAGAGGGCATCACCGACACGGCCACCATGAAGACCTTCTGCGGCACGCCAGAGTACCTGGCTCCAGAGGTGCTGGAGGACAATGACTACGGCCGGGCGGTGGACTGGTGGGGTCTGGGCGTGGTCATGTATGAGATGATGTGCGGTCGGCTGCCCTTCTACAACCAGGACCACGAGAAGCTGTTTGAGCTGATCCTCATGGAGGAGATCAAGTTTCCACGCACGCTCTCCTCCGACTCCAAGTCCCTGCTCTCCGGCCTGCTCATCAAGGACCCCAACAAACGACTCGGTGGCGGTCCAGACGATGCGAAGGAGATAATGCGCCACAGTTTCTTTGTGGCTATAGACTGGCAAGACGTCTACGACAAAAAGttGGTCCCCCCCTTCATGCCACAGGTCTCGTCAGAGACAGACACCCGGTATTTCGATGAGGAGTTCACGGCACAGACGATCACCATCACTCCCCCGGAGAAATACGATGAAGACGGAATGGGTGAGGGTGACAGTGAACGGAGGCCTCATTTCCCACAATTCTCGTATTCGGCCAGCGGACGAGAGTGAAGGTCattgccagccaaccagccagtatTGTCCCCCCCGTCCCGCCGTGCGTCCGTTTCGAGGAAAACACGTAGCCATTGTAGGAAAAGTCTCCCctcttttctccttctctgtATTCGAGTGCAGACTGGGAGAAGTTGTCTTTTTAGGGACTGTAAAAGGGGTTTTGCACAGTGGGATAGACTCAAGCTGGTCTCTCCACACAAAAAAAGTATCTTACATTTTCAACGCTATATACTGCAGAAGGCAATGTTTTTGTTATGTATTTTTATCCGTCAGTATTAGGTTGTCGACCTGTTACGTTCTTTGTCTTTTTAAAATTTTAGTTTGAACTTTTTTGCACTTGGTTTGGAAGAGCCGTTCTAGGGAACAAAACCAAAAATGTTGCCTTATGTGTGCAGATGTTTCGTATCATACAGACAGGGTTTAGGTCGGGGGGCTCGTGGTTCATTCAAACAATTATTTTTCTCATATACAATGCCATGGCGGTGCACATTCTCCAATCCCATGGAAAACGAGAGTCACTATCTgctaaaaacaacaaaaaagacaGAACTGACCGTTTCTTTCATTCCAATTTCATTGTCAGTGTTATTACTTTTCATCCTTTTTGACCTTTTCATTTTCTGCCAGAGATTTCTACTTGGTTATTGTTTGACAGAAACACTAAACTGCCAGATACTGCACGGTTCACTCAGGCAACACAGAGCACAACCGCATTCAACTCAGCTACCAGTTTAGCTTTACACACCCATCAGGGAAAAGCTACTATGAATATACAAGCCTTTTTTGCGTCTTTTTCCACAGTCATTTGATTAATAACTTATTTTCATAGCTATAGAAAAAATAGTGGTATAGATGTTTACACAAGGAATGTGGCTTATACAGGTCCACCTTATGCTGTCAtaacacacatgctcacacacacacacactctctaacaTCAGAGCCAGCTCTGAGCTCTGCTGATATGGCTTGTGACAGACTATGAAATCTGTATCTGTAAAAAAAATTGAATCTCCCCATCAATCTTCCCAAAGCGACAATGTGGGCGGAAGGCATCAATAATCAGTAACCATGTCGGGTCACAGATCACGTGTAACTGAGCCATGAATATACTTGTGTATGATGATATGATGAGGACTgtgagaatggagagagaaaaggaaagcaGTTCCCCCACGTTTTTTGATGTAAATATGCAATGCCTTTTTTTGTTCTTAGTGGCATCTTGGCCAGACATGAACTTTTGTGTGTGACTGTACTTCAAGCTTGCTGAGGAGAACCAAGACCGGAGGAAAAGGAAGACTGAGAATGACATTTTGGGTTAAAACAACGTAAACTACAACGTTAAAGACTGACTGGACGCTCCCATTTTGTGACTGGTGTCAGCGTCGCCTCGACCTGTCTTTCCAGAAGAGGTTTCCATGGAGACGAGACCCTTTTTCGCTGTTGGTCAAATAAATTGACACCCACTGTAATGTTTTCTTTTACCCGTTCAAGTGGGACCATGGtcaattctgcagtgatatgtgGTTACATCAGGTCGTTATCATTCCCTTCCTTTTTTGTACCATAGTACTAGATTTATTTATGTTTGTGTCATTCTAGGCAGTGTTACCCAGTCTTGTTCAGAGTCAAAAAGGCACCTCTCTTTAAGCCGCTGAAGGATGATATTGTTGGATGCATTACTAAAGTCTGTTTTTTATCCAATTGTTTTTTGGAttgtttgcttgtttgttttCTTACCAAAACATTAGGGCAAGAAACCAATAGTGAACTTGCAATGCCGTGGTAGTATTTATTTTGAATTAAATTAAAGAATACATTTCAGGGTT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04456 AKT; RAC serine/threonine-protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1318261 lncRNA upstream 17677 23710327 ~ 23711035 (+) True G1155958
TU1318210 lncRNA upstream 60547 23665781 ~ 23668165 (+) True LOC110485993
TU1318200 lncRNA upstream 136562 23591897 ~ 23592150 (+) True G1155901
TU1317568 lncRNA upstream 137279 23590768 ~ 23591433 (+) False pitpnc1a
TU1318308 lncRNA downstream 19652 23774209 ~ 23774491 (+) True G1156004
TU1318304 lncRNA downstream 20056 23774613 ~ 23775018 (+) True G1156000
TU1318329 lncRNA downstream 113513 23868070 ~ 23868285 (+) True G1156025
TU1318350 lncRNA downstream 164914 23919471 ~ 23919674 (+) True G1156046
TU1318370 lncRNA downstream 201693 23956250 ~ 23956539 (+) True G1156065
XM_021557269.2 mRNA upstream 42980 23679754 ~ 23685732 (+) True LOC110485995
XR_005035846.1 mRNA upstream 43737 23684841 ~ 23684975 (+) True LOC118938639
XR_005035845.1 mRNA upstream 45121 23683457 ~ 23683591 (+) True LOC118938638
XR_005035773.1 mRNA upstream 47067 23681520 ~ 23681645 (+) True LOC118938564
XM_021557263.2 mRNA upstream 60539 23611825 ~ 23668173 (+) False LOC110485993
XM_021557273.2 mRNA downstream 7229 23761786 ~ 23772997 (+) True LOC110485999
XM_021557279.2 mRNA downstream 28505 23783062 ~ 23789617 (+) True fam161a
XM_036940652.1 mRNA downstream 37096 23791653 ~ 23807108 (+) True LOC110485112
XR_005035826.1 mRNA downstream 45552 23800109 ~ 23800239 (+) True LOC118938619
XR_005035815.1 mRNA downstream 49703 23804260 ~ 23804396 (+) True LOC118938607
TU1318207 other upstream 129709 23595918 ~ 23599003 (+) True LOC110485992
TU1317569 other upstream 156932 23511926 ~ 23571780 (+) False pitpnc1a
TU1317231 other upstream 769361 22958932 ~ 22959351 (+) True G1155006
TU1316606 other upstream 1118433 22606308 ~ 22610279 (+) True c13h17orf67
TU1316561 other upstream 1216972 22511379 ~ 22511740 (+) True G1154412
TU1318398 other downstream 244089 23998646 ~ 24003968 (+) True G1156089
TU1318573 other downstream 572226 24326783 ~ 24328963 (+) True G1156247
TU1319586 other downstream 1009545 24764102 ~ 24764346 (+) True G1157117
TU1319792 other downstream 1346983 25101540 ~ 25105138 (+) True G1157292
TU1320347 other downstream 1658552 25413109 ~ 25414981 (+) True LOC110486053

Expression Profile