RNA id: XM_021557300.2


Basic Information

Item Value
RNA id XM_021557300.2
length 2122
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110486011
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24049629 ~ 24066383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaacccaAAAGAGGTGGGCGAACTGAGAATGGGTGGTGTCGGGTTTACTGATGGATTGATACATTGTTTCTTGGGACTGCAGTTCATTTTCTCAAGCGCGAGTGGCTGTCTCTGGTGTCAAGCCATTGATGTTTATCTTTTATTGAACGATGTCTAATATTTGCTCGAAGACTATAGGCTAGGCTTTTGGAATCTTTTTTGGAGAAATTTTCTTGGCACATATTTTGTCATACGTCCAAAGATGTCTGTTTTGGATGATATCAGCAAAGCCGGGATGGCAGAGTTTCAGGAGAAGCTGCGACTGCAGCATGAGGCCTCCATGCACAAAGAGCTGGAGAAGCTGCTGACCACAGCCAAGGGGGCTGAGCAGGAGATTTCCAAAAAGGACTTTGAGGGTTTTAAGAACCTCTTCCACAGATTCCTCCAGGTAAAAGGACCCTCTGTGAAATGGGACAAGATCCACAAGCCCCCAGAGGATCTGATCCACCCCTATGACAAGATCAAGGCCCAGGCGCTGCCGGACAGCGTGGCGGCCAGCCTCAACAAGCTGGTGGTGGTCAAGCTCAACGGAGGCCTGGGCACCAGCATGGGCTGCAAAGGCCCCAAGAGTGTCATCAGTGTCCGCAATGAGAATACCTTCCTGGACCTCACCGTCCATCAGATAGAGCACTTAAACAAGACATTCAACGTGGATGTGCCTCTTGTTCTCATGAACTCCTTCAACACAGACGAGGACACCAAGAAAATCCTGCAGAAGTACACACACCACCGGGTGCACATCCACACTTTCAACCAGAGCAgATACCCGAGGATCAACAAGGAGTCCCTGCTGCCCGTGGCAAAGGACCTGGGAATGCACGGCGACCACGCCGACGCCTGGTACCCGCCCGGCCACGGAGACATCTACGCCAGTTTCTACAACTCCGGCCTGCTGGACCAGCTGATCGCCGCGGGCAAGGAGTACATCTTCGTGTCCAACATAGACAACCTGGGGGCCACCGTGGACCTGTTCATCCTCAACCACCTGATGACGCAGCCCAAAGACAAGCGCTGCGAGTTCATCATGGAGGTGACGGACAAGACCCGTGCAGACGTCAAGGGTGGCACGCTGATCCAGTACGACGACAAGCTGCGTCTGCTGGAGATTGCCCAGGTGCCCAAAGCCCACGTGGACGAGTTCAAATCCGTCACCAAGTTCAAGATCTTCAATACCAACAACCTTTGGATCTCACTGGCCGCCATTAAGAGGCTGCATGAGCAGAACACCATGGACATGGAGATCATCGTCAACCCCAAGACGCTGGACGGTGGTCTGAACGTGATCCAGCTGGAAACAGCGGTGGGCGCCGCTATCAAGGCCTTCGACAACGCCCTGGGCGTCAACGTGCCCCGTAGCCGCTTCCTGCCCGTCAAGACCTCGTCGGACCTGCTGCTGGTCATGTCCAACCTCTACAGCCTGGACGCCGGCTCGCTCACCATGAGCAAGAAGAGGGAGTTCCCCTCCACGCCACACGTCAAGCTGGGCAGCTCTTTCACCAAGGTGCATGACTTTCTGATGAGGTTTGAGAGCATCCCAGACATGCTAGAACTGGATCACCTCACAGTGTCGGGAGACGTCACCTTCGGAAAGAACGTCTCTCTCAAGGGAACTGTCATCATTATTGCCAATCACGGAGATAGGATTGATATTCCTGCCGGAGCAGTGCTGGAAAACAAGATTGTATCTGGCAACCTGCGCATCCTCGACCACTAAGGCCTTCAGGACAAGACAGTTGCACAGACGAGACTCAAGGACAAACTACACCTAGGACTGTTTTAGAGCAAGGTTTCACTGTGATCCACCATTTCAGATAATTTATCTGCAGCTTACAAAGAAAGACTTGACCACAGTCAGGGTCATTTTAATCAGTTTTAAATGGGTGGGATGGTCCTCCTAATGAGCGTTGTGGTTCAGCACACAAGGCTtctaaggctgtgtttacacaagcagcccaattctgacaAAAGAGCTGAGCTAATTGGTGACAAGGCATATTAGTGGAAAAAGATCAGAATCGGgctggctgcctgtgtaaacagccTCTGTTGCCAACTCTGACCTGAATAAAGTGTAAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1318418 lncRNA upstream 17246 24033386 ~ 24033591 (+) True G1156109
TU1318416 lncRNA upstream 19704 24030913 ~ 24031133 (+) True G1156107
TU1318413 lncRNA upstream 23939 24026675 ~ 24026898 (+) True G1156104
TU1318405 lncRNA upstream 33744 24016625 ~ 24017093 (+) True G1156096
TU1318384 lncRNA upstream 71820 23977034 ~ 23979017 (+) True G1156079
TU1318438 lncRNA downstream 16305 24082688 ~ 24084733 (+) True G1156126
TU1318451 lncRNA downstream 29709 24096092 ~ 24097844 (+) True G1156139
TU1318528 lncRNA downstream 144727 24211110 ~ 24211418 (+) True G1156214
TU1318530 lncRNA downstream 147116 24213499 ~ 24213708 (+) True G1156216
TU1318533 lncRNA downstream 151680 24218063 ~ 24218297 (+) True G1156219
XM_036940665.1 mRNA upstream 4159 24035212 ~ 24046678 (+) False LOC110486012
XM_036940666.1 mRNA upstream 4159 24038031 ~ 24046678 (+) True LOC110486012
XM_021557292.2 mRNA upstream 60405 23984759 ~ 23990432 (+) False LOC110486008
XM_021557304.2 mRNA downstream 78829 24145212 ~ 24158953 (+) False LOC110486014
XM_021557305.2 mRNA downstream 78830 24145213 ~ 24158953 (+) True LOC110486014
XM_021557308.2 mRNA downstream 123670 24190053 ~ 24210340 (+) True actr2a
XM_036940674.1 mRNA downstream 195564 24261947 ~ 24300246 (+) False LOC110486019
XM_036940673.1 mRNA downstream 195565 24261948 ~ 24300246 (+) False LOC110486019
TU1318398 other upstream 46869 23998646 ~ 24003968 (+) True G1156089
TU1318207 other upstream 451834 23595918 ~ 23599003 (+) True LOC110485992
TU1317569 other upstream 479057 23511926 ~ 23571780 (+) False pitpnc1a
TU1317231 other upstream 1091486 22958932 ~ 22959351 (+) True G1155006
TU1316606 other upstream 1440558 22606308 ~ 22610279 (+) True c13h17orf67
TU1318573 other downstream 260400 24326783 ~ 24328963 (+) True G1156247
TU1319586 other downstream 697719 24764102 ~ 24764346 (+) True G1157117
TU1319792 other downstream 1035157 25101540 ~ 25105138 (+) True G1157292
TU1320347 other downstream 1346726 25413109 ~ 25414981 (+) True LOC110486053
TU1320533 other downstream 1396544 25462927 ~ 25463458 (+) True G1157952

Expression Profile