RNA id: XM_021557315.2


Basic Information

Item Value
RNA id XM_021557315.2
length 3390
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110486021
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24317048 ~ 24321237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAACGGAAGTGGAACTGAATCATGGGAACAACATGGCGGAATGTTTGAATCTCTGATGTTGTTCCAAAACAACATGTCTACATTTCGCTATTACACGATGTAGCTAAAAACATTCTGGTACCTACATATCTTTATATCAAGTTTCATTATAAATGCCAGTTACTATCCCTGCGAACAATATGACAGAATGGCGAACATGTGATACGCCCGCGTCGGGAATGACAGCTGGTTCAGACGAGAGCAAGCAAGGTGGAGGGAAACCGAAAACAAACAGACTGAGAAGAAGCCTCAAACAAACGCAGGCAACTCCATCTCTCATTGTTTCTCCAAAAACATGTCAAGATTTCAAGAAGCCAACTCGTGTGACAAGATCAAGATACAACAATGTATTCAACAAAGGAGAGTCGCCAATGAATGAATCAGAACTTCAACAGGATATCGTTTGGGATGCAACTTCCCCTTCACCCCTTAGGACAGTTAGCAAAAGAGGCAAGAAGTACTCTGCAAATGTTGGAATTGTGGACATTTCCGATATTGTCAACAGAATAGCTCCCAAGCATGGGAGACCTGTAGTTCCAGAGTCATCCTTGCTCCAGTGGATTGGAGACAGTGCTATTCCCTGCACCCCAGAGATGCAGCAGCCCAGGGCCAAGAAGAAATCCCCAAGGACAAATGGAGTGGACGACCTTTTAAAGTTGGCGAAACAGTTTGATTTCAACATGTTTCGGCAAGACGAAGAACGAGTCAATGATATGCACAAGCAGAGTTTGGCGCTTTGGAGGACAGACTCGGAGGACATATTGGTTTCAGATGGCAACGAGAACCAGCCTCCTCCCTTACTGAGTAATGGCACACCTGAAAGTACACAGTCCGCCCTTAAAACAAACAGCATGAGAAACTCCAAAGACCAGATACCCCCTGACCATGAGATGGAAGATGATATGGATTTTTTATTTGATGGACCAACTCAACACATAAGTCTGAACTTAAGTCAGAATTCATTGCCTCGGTCCTTGGAGGTGAAGACTGCGCCCACTATGTCCTCCAAAGTCATTCCTGGAAAATATCCTTATTCCATACATGGCCACACTTCGACCGTCTCCTCATCGCATCCTGTCAAAAGATGCTCAGCAAATAATAACTTTGACGACGACTGGGAAAATGACGGTTTGCTGGAGGACCCGCTGGTATTTGAGATGACCCAAAACCCAGACCTCTTTGCCGCTCCTAATCATTGTTCGAACCAAAAAGGGTCGAATGAAACAAAACATGAAAACAACAACCCCTCAGCCATTCCCAAAAATGCTCTTCAAGGAAGTAGAGACATAAAACCAGCGGTGTCTAAAGGACAGAATGAAACTGTGAAAAACAGAAAAACATTCACACTTGAAGCAAATCCCAATGTACAATCAAAAAGTATCCTCTCAGAGGCATTACCAAAAGTAGGGAATGTCCCCGACACTGTCAAACCAGCACCGCGTAGGAACGTACGGCAAAACCAACCAAATCTCTTTCCAATCAACAAAGCTCCGTCAATGGAGTCCAGTTACCAACTTAGCCAGCAAACACAGCGCCTGTCTAATGGAATAAAGGCTTGGCCGCAGGTGCCTCTTTTTCAAAGTACATCGATCTCAACCAGCTCATGCACATCAAACTTCACCAACTCTTATTCAATGTGGCCCCTTCAGGTTGAGAATAGCTCTTACCACAAGCCCACAGAGAACAGCAATATGAAGGGAACAGGTGTCATCAAGGCCCCAGCTAGCCACAGCGTCATCCCAGAGGACGACTTGGACTCTCTCTTTGCTTCTGACGCCATCTGGGATGACAAAGACGATGACCTATTGTGCCAAGCATGTGATCACCTGGAAAGCCAGGTACAGAGCATGGAGGACCCTGTTATCACACGCTCCCAATTCCTGCCCAGTAATCAGACAGAAAGTCAGAAGTTTGTCCCTGTCTCTGCGCCTTTGAATAGCAGCAGATACAATGTAAATCAAACGACTGAGACCACACAATCCAAATATCCCAACAATTCAGTTTATTTACAATCGGCCCCCTGGAACGGGAGCACCCACTCTCTCAATAACAACAAAGTACCTGTTACTGTGGTCTCTGGTTCTGAAAGACCGAGTTACATTACCTCAGCTGGAAATGCTGGCACTAACTCCACGTATAGACCACAGAACATACGAAAGTCATACGAAAGTACTCGGGTCAAAAATACTTGTGTAGCTGGGAGCACAGCTAATCAACAAGGCACTGGGAGTGAAGCAGCTGGGAAATGTTCTGTGGTGGAGATTGAACTGAAGAAACAGCAGGCCATGGAGAGGAGACGGCAACGGATGCAGACGGCCCACAACCTAAGGGCTCCAACCTGAGGCTGGTACAGTGCACATATACAAGAAGATTCAGAATCATAGTTGGACAGTGTTGGTTTACTCTAAACGTTGACTTGTGCTAGACTGACCATACAGAGCTCTTGAAAGTAGACTTACTATAGAGTTGTTGTAGCCTCGTACTACCATCCTGATCTCGTAGCAAAACAGATTGTAAGCTCGCTAGTCCAGGATGGTTGTACGAGGCTAGAGCTGCCGTGCCTTTGTCTGTATTCCAACTCGTAATTTACATCACTCAATCCATTTCTGAATAAGATTTTAATAGTTTTAATATAAATGTTCTTATTTACGTTAATCTATTAACTGTTAACAaagtaactttaaaaaaaaaatttaacaaTAACCTATTTTCAGGGAGTATGTTACCAGTTGTGTTTGCAGAGTAGGCTAAGCTTGTCCTGTCACGTTTTCATATTATTCATTATATCAGTTTGGTAAATTACCATAGCATTACAACATGAGCGGTTTTCTGATTAAAAACACGAGTCGTCTTGTGCTGTCATATGTTTCTATATTATGTTTATCTGTCttttacttcttttttttttacattgtttataTGTTTGTCATTTGCACAATAATGAAACTGCCTCAAAAGATGACACACAGATATTAAAGTTGCGAAAGGATTCCCACCCACCCTTTCCAGACAATACTATATTGTGTACAGCAGTGACATCTAGTGCCCTTTTGTTTCTGTGTCATGTAGGGTCACTCTTTCTTTAGCAGACCATCATTTATTTTTGTGGAATACAACAGAGCTACTGTCACGAAGCACAAAATAACCAGTTTGATGCAACAGTCAACACAGTACGAAGAGCTCCTTTAGGACCAGCACACATAGTAATGAGTAGTGCTTTCAACAGAAATGGTgtacgtcccaaacggcaccctattccctgtgtagtgcactacttttgaccagggaactaaatagggagtagggtgccatttaggatgcaacaTCTATCCTTTCTCTTGATCctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1318602 lncRNA upstream 2679 24314159 ~ 24314369 (+) True G1156276
TU1318599 lncRNA upstream 7394 24309448 ~ 24309654 (+) True G1156273
TU1318541 lncRNA upstream 16807 24295426 ~ 24300241 (+) True LOC110486019
TU1318491 lncRNA upstream 87810 24224783 ~ 24229238 (+) True G1156177
TU1318536 lncRNA upstream 94705 24222057 ~ 24222343 (+) True G1156222
TU1318612 lncRNA downstream 32937 24354174 ~ 24354853 (+) True G1156286
TU1318618 lncRNA downstream 46292 24367529 ~ 24367754 (+) True G1156292
TU1318620 lncRNA downstream 49037 24370274 ~ 24370496 (+) True G1156294
TU1318623 lncRNA downstream 53552 24374789 ~ 24375132 (+) True G1156296
TU1318626 lncRNA downstream 57247 24378484 ~ 24378713 (+) True G1156299
XM_036940674.1 mRNA upstream 16802 24261947 ~ 24300246 (+) False LOC110486019
XM_036940673.1 mRNA upstream 16802 24261948 ~ 24300246 (+) False LOC110486019
XM_021557308.2 mRNA upstream 106708 24190053 ~ 24210340 (+) True actr2a
XM_021557304.2 mRNA upstream 158095 24145212 ~ 24158953 (+) False LOC110486014
XM_021557305.2 mRNA upstream 158095 24145213 ~ 24158953 (+) True LOC110486014
XR_005035760.1 mRNA downstream 50387 24371624 ~ 24373364 (+) True LOC118938548
XM_021557321.2 mRNA downstream 92283 24413520 ~ 24437613 (+) False LOC110486025
XM_021557322.2 mRNA downstream 92283 24413520 ~ 24437613 (+) False LOC110486025
XM_021557323.2 mRNA downstream 92283 24413520 ~ 24437613 (+) False LOC110486025
XM_021557327.2 mRNA downstream 92285 24413522 ~ 24434443 (+) False LOC110486025
TU1318398 other upstream 313080 23998646 ~ 24003968 (+) True G1156089
TU1318207 other upstream 718045 23595918 ~ 23599003 (+) True LOC110485992
TU1317569 other upstream 745268 23511926 ~ 23571780 (+) False pitpnc1a
TU1317231 other upstream 1357697 22958932 ~ 22959351 (+) True G1155006
TU1316606 other upstream 1706769 22606308 ~ 22610279 (+) True c13h17orf67
TU1318573 other downstream 5546 24326783 ~ 24328963 (+) True G1156247
TU1319586 other downstream 442865 24764102 ~ 24764346 (+) True G1157117
TU1319792 other downstream 780303 25101540 ~ 25105138 (+) True G1157292
TU1320347 other downstream 1091872 25413109 ~ 25414981 (+) True LOC110486053
TU1320533 other downstream 1141690 25462927 ~ 25463458 (+) True G1157952

Expression Profile