RNA id: XM_021557328.2


Basic Information

Item Value
RNA id XM_021557328.2
length 4093
RNA type mRNA
GC content 0.56
exon number 25
gene id LOC110486025
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24413520 ~ 24441284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACCGAGTACCCGTATCAGCTTTGTGATTTACTATCGTATGACACTTTGTGTGTTTGATTCTTTTTTTCTGTGACGGTAATGTTAGCAGGCTAATATAAAGTGCACGCTCAAGTCTCAGGGAGGCGCATAAAGTAGCTAGCCCTCTTCTTTTGAAAGTAAACTTGGCTCTGTGTGTAACCGGTCGGGTGGTACAAAGGAAATTGGAAACAGACTCAAGATACCGAATCGCGCTTAGCCAGCTGGTTTTGGGTGCTAGCCACATTTATTTGTACTTCTCACGATTGGGTTGTTCCTTTCAAGGATACCTGGATCTAGTAGCAGGTGACGCCGACAAAACAGGGATGTGCAATGGCATCGGTGCGGGTGGCTGTCCGGCTCAGGCCTATGAACAGACGGGAGAAGGACTTGACTGCCAAAAACATAATTGAAATGAAAGGGGACAAGACCACCATTACAAACTTGAAGATACCAGATGGCATTACCGGGGATTCGATGAGGGAGAGTAAAAAGACCTTCACCTATGACTTCTCCTATGACTCCGCTGACAGTAAAAGCAACACCTTTATCTCTCAGGAAAagGTGTTCAAAGACTTGGGCTCAGATGTTCTCAAGGCTGCGTTCCAAGGCTACAACGCCTGCATCTTTGCCTATGGCCAGACCGGCTCGGGGAAGTCCTACACCATGATGGGAAATCCAGGAGATGCTGGTCTCATTCCACGGATATGTGAGGGTCTGTTCAGTCGGATTGCTGGGATGACTCGTTGGGATGAGGCCTCCTTCCGCACCGAGGTCAGCTACCTGGAGATCTACAATGAACGTGTCAGGGACCTGCTCAGGAGGAAGTCCACCCAAACCTACAACCTGAGGGTGAGGGAGCACCCAAAAGATGGACCCTACGTGGAAGATCTGTCCAAGCACCTGGTGCAGAACTACCACGACGTGGAGGAGCTGATGGAGGCGGGCAACATCAACCGTACCACGGCCGCCACGGGCATGAACGACACCAGCAGCCGCTCGCACGCCATCTTCACCATCAACTTCACCCAGgctAAGTTTGATGCGGAGATGCCCTGCGAGACGATCAGTAAAATCCACCTGGTGGACTTGGCGGGCAGCGAGAGAGCGGACGCCACCGGTGCCACTGGAGTCCGGCTCAAGGAGGGCGGCAACATCAACAAGTCACTGGTCACCCTGGGCAATGTCATCTCCGCTTTAGCGGACCTGAGCCAGGACGGAGTGAACACCAACCTGAAGAAGAAGCAGGTGTTTGTGCCTTACAGAGACTCTGTGCTAACGTGGCTCCTCAAGGACAGCCTGGGAGGCAACTCCAAGACCATCATGATCGCTACCATTTCACCTGCTGACGTCAACTACGGCGAGACGCTGAGCACTCTGCGCTACGCCAACCGTGCCAAGAACATCATCAACAAGCCCACGATCAATGAGGACTGCAACGTCAAGCTCATCCGAGAGCTCAGGGCCGAAATTGCCCGACTGAAGGCCCTTCTGGTCCAGGGAAACCAGATTGCACTTCTTGACTCACCCACCGCTCTGAGCATGGAGGAGAAACTACACCAGAACGAAGCCCGAGTGTTGGAGCTAACCAAGGAGTGGACTAACAAGTGGAATGAAACTCAGAACATTCTCAAGgaagaaACCCTTGCCCTGAGGAAAGAGGGAATCGGTGTCGTCCTCGATTCGGAGTTGCCTCATCTAATTGGTATCGACGACGACCTCCTAAGTACTGGCATCATCCTCTACCATCTAAAGGAGGGCAGGACGAATGTTGGTCGAGACGATGCGTCGACTGTTCAGGACATTGTTCTCCATGGGCTGGACCTAGAGAGTGAACACTGCATGTTTGCGAACCAGACCGGCACTGTCACACTGGTTCCACTCAATGGGGCCCAGTGCTCCGTGAATGGAGTGCAAGTGACAGAAGCCTCCCCACTAAACCAAGGTGCTGTTATCCTTCTGGGGAGAACCAACATGTTCCGTTTCAACCACCCTAAAGAGGCAGCTAAACTAAGGGAAAAGAGGAAGAGTGGACTGCTCTCTTCCTTTAGTCTGTCCATGACCGATCTCAACAAATCATGTGAGAACCTCTCCACAGTAATGCTCTACAACCCAGGTCTCTTCACTGAAAAGGGGCCTATCTATCTCAGGTTGGAATTTGAGAGACAGCAACGGGAAGAGCTGGAGAAGCTGGAACACAAAAGGAGGCTTATTAAGGAGATGGAAGACAGGCAGAAGTGTGAGAAGGCGGAGCTGGAGCGCCTGCAACAGGAGGTGGAGTCCCAGCGCAAGGAGTCGGAGCAGGTGCAGCAGCGCATCCGCCGCCAGGAGGAGACCCTCCGCTGCCGCAGCCAGGACATCGAGAGCCGCCTGCGCGACCTCCTGGCGGAGAAGCAGCGCTTTGAGGAGGAGCGCCACCGCGAGACCAAGGAGCTGGAGCTACACAGGCGCCAGCGGCGAAAGCAGCAGGAGGAGCGCGAGGATGAGAAGACGCAGGACGAGGAGGCGCGACACCATAGCGAGGCGGCAGAGCGTGCCGAGCAGGCGGAGATCTTCCGCGAGCTGGAGCGGCTGAAGCGGGAGCACGAGGAGCAGGCGGTGCGGCTGGAGGCAGAGAGGCGGAGGCTGGAGGAGCGCGAGATGGAGCAGCTAGGCCTGGTGGGGCGCCTAGAAGAGCAGCTGAGGGAGCGCCACGAAGCGGCGGCTGCCCGGCTGACCCGCGAGGACACCCGGCGCCTGGAAGAGGGGCGACGTGCCTTGGCCGAGATCCGCTCCGCCCTGCTCCGCGCCAAGGAGGCCAGCGGGCGCTCTGACTGCGACGGAATGGGCGAGGAGGCCGGGCGCGCTGCCCAGGTCCGTTACACGGACTTCAAGGCAGCGCAGGTGGAGGAGCTGGGTCAGTTGGAGGAGGGTCTCCGGCTGCAGAAGGAGTGCCTGGAGAAGGAGGTGGCGTCAGAGCGCGCAGCCCTGGCCGTCCTGGTCCACGCCCACAAGGAGCGGCAGCGACAGCTGCAAGAGACCCAGGAGAAGGGGGCACAGGACTCCTCAGAACTCTCCCAGGAGGAGCAGCGGATGCAACAGGCTGAGCAGTGCCTCCTCTTCAAGGACCGCCGGCTAGCCAGCCTAACCGACAGCCTCCTGCCAGcggtggctgaggaaaggcagaGGGCTGAGGAGCTGCTGAAACTCGGAAGCTCCTCTGGCGCTGGCAGCATTTCGAACATCTCCCTGGGACTAGACAACACCCTGTACCAGGTGGAAAAGGAACttgaggagaaggaggagcgCCTTACCTCACACTGCGCCAGCGCCGAGCAGCTTCAGCAGCTGCAGGAGACGTACGAGTTCACGGCCAATGTGGCACGCCAGGAGAAAAAAGTGCGGCGCAAGGAAAAGGAGATCCTGGAGTCACGGGAGAAGCAGCAGCGTGAGTCCCTGGAGCAGGCAGTGGCGCGCCTGGAGAGAAGGCACTCGGCGCTGAGGCGCAGTGTCTCACAGGACCCAGAGAGTGTGGAATCCAGGCACAAGGCCTGGGGTTCTGGGCCCGCGCGGGAACTCGACCAAGAGAGGGTGGACCGGGAGATCCAGAAGCTGAAGCAGAGGATCAGTAAACCTGAGGGAAGTGGAAGGAGTCACACTGGGAGCGGAGATGAAAAGACCAGTCTCggcaccccccctgtcagcccAATCCAGAGCCTACCCCCAGTGCTGCCGATCACCGATGAcggGATAAATGCATACATTGAGGAGGAGGTTAAGAGAAGGTTACAGAAGCTGAACCTCTTCAATGGTGACAAAAGCATTGAGCTCTCGCTTTCATCTGAATCTCTGCAGGATGATGACAAGCTGCAAAACCTTGTCAACCCTAGGAAATTGAAATATGAGTTCAATCACAACTGGATTTTTACACTTGGTGGAGGAAGATCTTAATTTACTGGGAAAGACTCCATGCCCTTGCTGTGGCGTAGCTTCCTGTGTGTCCCAGAACGTGAGACGAGCACTCACCTGGAAGGGGCTACAACAAGTTCAGAAGAAGAAGGCGGCAAAGACCGCTCTGAATTAGATAAAATTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1318666 lncRNA upstream 11160 24401574 ~ 24402362 (+) True G1156334
TU1318641 lncRNA upstream 12741 24400482 ~ 24400781 (+) True G1156314
TU1318628 lncRNA upstream 33240 24380073 ~ 24380282 (+) True G1156301
TU1318626 lncRNA upstream 34809 24378484 ~ 24378713 (+) True G1156299
TU1318623 lncRNA upstream 38390 24374789 ~ 24375132 (+) True G1156296
TU1318711 lncRNA downstream 109152 24543595 ~ 24544417 (+) True G1156377
TU1318723 lncRNA downstream 191663 24626106 ~ 24638043 (+) False G1156385
TU1318724 lncRNA downstream 191663 24626106 ~ 24655031 (+) False G1156385
TU1318721 lncRNA downstream 214225 24648668 ~ 24655031 (+) False G1156385
TU1318722 lncRNA downstream 214225 24648668 ~ 24655031 (+) True G1156385
XR_005035760.1 mRNA upstream 40158 24371624 ~ 24373364 (+) True LOC118938548
XM_021557315.2 mRNA upstream 92285 24317048 ~ 24321237 (+) False LOC110486021
XM_036940675.1 mRNA upstream 92285 24317048 ~ 24321237 (+) True LOC110486021
XM_036940674.1 mRNA upstream 113276 24261947 ~ 24300246 (+) False LOC110486019
XM_021557332.2 mRNA downstream 29889 24464332 ~ 24476087 (+) False esf1
XM_021557333.2 mRNA downstream 29889 24464332 ~ 24476087 (+) False esf1
XM_036940679.1 mRNA downstream 30698 24465141 ~ 24476087 (+) False esf1
XM_036940681.1 mRNA downstream 33639 24468082 ~ 24476087 (+) True esf1
XM_021557339.2 mRNA downstream 50161 24484604 ~ 24522503 (+) False LOC110486030
TU1318573 other upstream 84559 24326783 ~ 24328963 (+) True G1156247
TU1318398 other upstream 409554 23998646 ~ 24003968 (+) True G1156089
TU1318207 other upstream 814519 23595918 ~ 23599003 (+) True LOC110485992
TU1317569 other upstream 841742 23511926 ~ 23571780 (+) False pitpnc1a
TU1317231 other upstream 1454171 22958932 ~ 22959351 (+) True G1155006
TU1319586 other downstream 329659 24764102 ~ 24764346 (+) True G1157117
TU1319792 other downstream 667097 25101540 ~ 25105138 (+) True G1157292
TU1320347 other downstream 978666 25413109 ~ 25414981 (+) True LOC110486053
TU1320533 other downstream 1028484 25462927 ~ 25463458 (+) True G1157952
TU1320563 other downstream 1038679 25473122 ~ 25473978 (+) True G1157972

Expression Profile