RNA id: XM_021557333.2


Basic Information

Item Value
RNA id XM_021557333.2
length 2862
RNA type mRNA
GC content 0.51
exon number 14
gene id esf1
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24464332 ~ 24476087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACTGAACTGTGGTTTGGTACTGCCTGGCTTGCCGTATGCAAAAAGGGGTGGGACAAGAAAAAGGTCACGAAAGTGGTGCATGTTGGGAGAACACGTGGATAGCGGTACAATTTAATCGGAAAAGTTGTTTTGATACTCCTCCTCCGACGACTTAGTCATCATGGATTCCAAAAAGGGCCAAAGCGGCGATGACCGCTTCCAAAAAGTGAAAAAGGACCCCCGCTTCTGGGAAATGCCAGAGAAAGAGCACAAAATCAAGATTGACAAGCGCTTCCAGTCCATGTTCCACGACGATCGCTTCAAGCTCAAGTACACGGTCGACAAGCGCGGCCGACCCGTCAACCACACCTCCTCCGAGGACCTGAAACGTTTCTACAATCTCTCTGACtctgaggaggaaaaggaggatggAAAGGATAAAGAGAAGAAAAATAAGACACAAGCAAAGTTGgacactggggagagagaggataaggTAGTGGATGAGCCCAAAAAGCCTTCACAGTCCATAAAGAGTGGACCTAAAGGAGACCAGCCTATCAGAGGAGTCAGACTGTATGACGAAGAGGAAGATGACAAGGTGCCTCACATTGAGGGGGACGATGTGGACCAGGCGGCCAGCATCTCAGACGGCAGTGAGGATGACGAAGATGAAGCAGATGTGGAGAGTGACATGGAGAGCGGCTCCGAGGACGAGTCCGGTTCAGAGTTAGACGAGGACAGTGACGGCAGCGGGCCAGATCTGGCCAGGGGGAAAGGCAATGTGGAGACCAGCTCAGACGAGGACGACGATGATGACGTGGAGGCCATCTTGAAATGCGAGGAGGAGGAGATCCAGCACGACTGGGGCGAGCTGTGCAAGGATGCGCCGCGGAGCGAGGAGGTAACCCAAAGGCTTGCCGTGTGTAACATGGATTGGGACCGGATGAAAGCCAAGGACCTGCTGGCTCTGTTTAACTCCTTCAAGCCTAAAGGAGGGGTTGTGCTCTCTGTGAAGatCTACCCCTCAGAGTTTGGGAAGGAACGGGTTCAGCAGGAACAGACCCAGGGTCCCCTGGAGCTGATGGCCCTGCCGGAGGATCCGGacaaagacacagaggaggagaagaTTTACAGAGAGAAGATGCGGGACTACCAGTTCAAGCGGCTAAAGTACTACTATGCGGTGGTGGAGTGCGAATCGCTCGACACAGCCGCTAAAATCTACCAGGAGTGTGACGGCTTTGAGTACGAGAGCAGCTGCTCTATCCTGGACCTCCGGTTTATCCCTGATGATGTGACGTTTGACGAGGAGCCAAAGGACTTGGCCACAGACGTGGACCTGTCTGCCTACACCCCCAAGCTCTTCACCTCCACAGCAGCAGCCACGTCAAAGGTAGAGTTGACCTGGGACGAGACGGACCACGAGCGTGTCACTGCCATGAACAGGAAGTTCAACAAGGACGAGCTGCTGCAGATGGATTTTAACGCCTACCTGGCCTCCTCCAGCGACgacgatgatgatgaggatggagtggagaaggaagaggagctTCCAGAGGTTAAACAGCCAGAAGAGGCCAGcaaggaggtggagaaggaggccAGGAAAGGGAAGCAGAGCAGCGGCAAGCAGATAGAGAAATACAGAAAGATGCTGAAGAGCATCCAGGAGAAAGacaagaagaaggaggaggacaaGGGCATGGAGATGGAGATCACATGGGTGCCAGGACTGAAGGAGACAACTCAACAGTTGGTAAAGAAGAAGCTAGAAGGGAAGGACAAGCTGACACCCTGGGAAGAGTTCATTGagaagaaaaaagacaagaaaaaGCAGAAGATGACCAAAGGAAAGCAGGAATCAGATGATTCGGACCTCAGTGACGATGCGCTTCCTCCAGACGTTGACTTTGATGACCCCTTCTTTGCTGAAGAGCTTGGTTCTACAGATCTGAAAAAGAAAGCAAAGAGCAAGAAAAACAAaaaggtggaggagaggacagctgaagaggagaggaggagttggAGAAACAAAAGGCTGAGATGGCCCTGCTCATGGACGACGAGGACGACGACAAGCACAAACACTTCAACTACGACAAGATCGTAGACGAGCAGAACCTGAGcaaaaagaagaggaagaagcttCTGAAGAAGGACAACACGAGTCTGGAGGAGGACGACTTCCAGGTGGACGTGAAGGACCCTCGTTTCCAGGCCATGTTTACCTCCCACCTCTACAACTTAGACCTGTCTGACCCGGGCTACAAGAAGACTAAGGCCACCCAGAGCATCCAGGTCGAGAAGCAGCGCCTCAGGGAGGAGcgccagcacgaccaggacaagGCGCTCAGGAGCTCACAGGCCCCGCCCACACAGGAACCAATTGCCAGTGGCCAGGCGGTGGCTGAAGCCACCAAGAAAATGGACCCCGGACTGTCCATGCTTATCAAGTCTATTAAGAACAAAACAGAGCAGTTTCAAGCACGAAAGAAACAGAAGACAATGTAGGCCTCTCTAACTGGACTATTGGGGACTACGTTTCTGGGTGAAAAGCTATCTCTTTGTGTTGAAGCGACTGTTGGCGTGTGTGAGAGGCCTGAGACGAGACACGCCCACTTTTATTTTGAACTATCACTCTACAAGAGGCCTAATCAGGAACACAAAGTTGAAGATAGTTTGAATGTGTAATATGCTAATTAACATTGAGACACTTGTATAAAACATGTTCTGGGGGACTGCCAACAGTAAATGGTGGTTTCATGGATCTCTGAATAGTATTTTTTTACTCTTGCTCTAAATTATACAAACCTGCTCTATAGCCCCGGTCTGAGCCCTTAAAAATACTTATATATTAAAAGACACTTCACACAATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1318666 lncRNA upstream 61970 24401574 ~ 24402362 (+) True G1156334
TU1318641 lncRNA upstream 63551 24400482 ~ 24400781 (+) True G1156314
TU1318628 lncRNA upstream 84050 24380073 ~ 24380282 (+) True G1156301
TU1318626 lncRNA upstream 85619 24378484 ~ 24378713 (+) True G1156299
TU1318623 lncRNA upstream 89200 24374789 ~ 24375132 (+) True G1156296
TU1318711 lncRNA downstream 67508 24543595 ~ 24544417 (+) True G1156377
TU1318723 lncRNA downstream 150019 24626106 ~ 24638043 (+) False G1156385
TU1318724 lncRNA downstream 150019 24626106 ~ 24655031 (+) False G1156385
TU1318721 lncRNA downstream 172581 24648668 ~ 24655031 (+) False G1156385
TU1318722 lncRNA downstream 172581 24648668 ~ 24655031 (+) True G1156385
XM_021557324.2 mRNA upstream 23048 24413523 ~ 24441284 (+) False LOC110486025
XM_021557325.2 mRNA upstream 23048 24413524 ~ 24441284 (+) False LOC110486025
XM_021557326.2 mRNA upstream 23048 24413524 ~ 24441284 (+) False LOC110486025
XM_036940677.1 mRNA upstream 26719 24426190 ~ 24437613 (+) True LOC110486025
XM_021557327.2 mRNA upstream 29889 24413522 ~ 24434443 (+) False LOC110486025
XM_021557339.2 mRNA downstream 8517 24484604 ~ 24522503 (+) False LOC110486030
XM_021557340.2 mRNA downstream 9829 24485916 ~ 24522503 (+) True LOC110486030
XM_021557343.2 mRNA downstream 78858 24554945 ~ 24624188 (+) True LOC110486033
XM_036940684.1 mRNA downstream 231060 24707147 ~ 24718537 (+) False LOC110486034
XM_021557349.2 mRNA downstream 427964 24904051 ~ 24996436 (+) False LOC110486038
TU1318573 other upstream 135369 24326783 ~ 24328963 (+) True G1156247
TU1318398 other upstream 460364 23998646 ~ 24003968 (+) True G1156089
TU1318207 other upstream 865329 23595918 ~ 23599003 (+) True LOC110485992
TU1317569 other upstream 892552 23511926 ~ 23571780 (+) False pitpnc1a
TU1317231 other upstream 1504981 22958932 ~ 22959351 (+) True G1155006
TU1319586 other downstream 288015 24764102 ~ 24764346 (+) True G1157117
TU1319792 other downstream 625453 25101540 ~ 25105138 (+) True G1157292
TU1320347 other downstream 937022 25413109 ~ 25414981 (+) True LOC110486053
TU1320533 other downstream 986840 25462927 ~ 25463458 (+) True G1157952
TU1320563 other downstream 997035 25473122 ~ 25473978 (+) True G1157972

Expression Profile