RNA id: XM_036940685.1


Basic Information

Item Value
RNA id XM_036940685.1
length 5953
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC110486038
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24904051 ~ 24996436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTGACAGCTGGCTGCTCCGACATGAATGTGCCTGCCCAGTAGAGAGAGCTGTAGGTAGCTATTTCCTTTCCATTTCATATCACAGGGGCGGTTAAAGGAAAACCCATCCGTCTGAGCACAGTCGTGCCAGCTTGTGCGAACTGAACCCACACACCTGGCCTGGGCATGGACGAACAGGCAGGGCCCGGCGTGTtctttaacaacaacaacaactcggGTTTGCCAGGCGCTGGCAAAGGACCGCAGCAGCCGGGCGACGTCGGTGGCGGAGAGGCGGCCAGGGCTCATTACAACATTCCGGGGATATTGCACTTTCTGCAACACGAATGGGCCCGTTTCGAGGTGGATAGAGCGCAATGGGAGGTGGAGCGAGCCGAATTGCAGGCCCAGATAGCCTTCCTGCAGGGTGAGAGGAAGGGCCAGGAGAACCTGAAGAAGGACCTGGTCAGAAGGATCAAGATGCTGGAGTATGCCCTCAAACAGGAGAGGTCAAAATACCACAAGCTCAAATATGGAACAGAGTTGAACCAAGGAGACATGAAACCTCCCAGCTACGATGATTCCGatgAAGGGAATGAAAACGAGGTCCCGAGCCCCCCCAACAGTAGTCAGCTGGGTTGGAAACAGGGACGGCAGCTGCTCAGACAGTACCTTCAGGAGGTGGGCTACACGGACACCATCTTGGATGTTAAGTCCCAGAGGGTCAGGGCGCTGCTGGGCCTGGCTGGAGACTCTGGAGAGAGGCCGTCGGTCAGGAAACCGGAACCCATGGTCAACGGCACCGAGCCATCTTTTCAGAAGGACAGCGGCATGATCAGTAAACCTGACATGTCTGACTCGGCCACTGTCCTTGAGGCCTTCAAGTTCATAGAAAGCGCCGCCGCCGAGTTTAGCGACGAAGATGACGACGAAGACAGCGACGGGAGGGACAAGACCATTATGAACTTGGCCACTATGGTGAGGAAGAAGACGTCTTCTTCCCCCTCCTCATCCTCGGACATGAGTGACGACCCGGACACAGAGGAGGCCCTGAAGGGCTTTGACTTCCTGGCCAGCCCAGATGAGATGGAAGGATCGCCCGATGTCCGGAGTGTTGAAGACAGCGGTGactgggAGAAGGAAGAGCTGTGCCCCATGCCTGAGGCCTGGGATGTGGACCAGGGCCTCATAGCCCAACTCAAGGAGCAGTACAGGAAGGAGCGCAAGGGCAAAAAGGGGGTGAAGAGGCCTAATCGGTCCAAACTGCAGGATATGCTGGCCAACCTGCGAGACGCCGAGGATCTCCCCTCCATGCAGCCCCCCGTGACACCGCCATCCCGGCCCAGCGTCCCCAGGCTCAATGAGCACGAAGTGGGCCACCCCGAAGAAGtGGAGGCCATGACGTTTCCGCCCACGTCAGGGAAGTCGTTCATCATGGGGCCGGACGAGGCGGCGGAGAGCGAGCTAGGCCTGGGCGAGCTGGCCGGCCTCACTGTGGCCAACGAGGCGGACAGCCTGGCCTACGACGTGACCAACAGTCAGGATGCGCTGCGGAAGACGTGGAACCCCAAGTTCACGCTGCGGAGCCACTTTGACTCCATCCGGGGCCTGGCCTTCCACCCCGTGGAGCCCGTCCTGGTCACTGCCTCCGAGGACCACACCCTCAAACTGTGGAACCTCCAGAAGACCGCCCCCGCCAAGAAGTGTGCTGCCCTAGATGTGGAACCCATCTATACTTTCAGGGCCCATCGGGGTGCGGTGTTGTGTGTGACCATGAGCTCCACAGGGGAGCAGTGCTTCAGTGGGGGGGTGGATGGAACCATTCAGAGCTGGAACACCCCTAACCCCAATATTGACCCCTATGACTCATATGAGCCCTCGGTGCTGCGGGGTGCGCTGCTGGGTCACACTGACTCAGTGTGGGGAGTGGTCTACAGCTCGGCCCACCAGCGCCTGCTCTCCTGCTCCGGGGATGGCACTGTGCGCCTGTGGAACGCTGCCAACACCTCCCCCGCACTCGCCATCTTCAACGAGAAAGGAGAACTGGGCGTCCCCACGTCAGTGGACCTGGTGTGCAGTGAGTCGGCCCACATGGTGACGTCGTTTAGCACGGGGGAGATCGGACTCTTCAACATGGAGACGCGGCAGCTGATCCTCAAGCTGGACCAGACTGGAGAGCCCGAAGCCCCGTGCAAGATCAACAAGGTGCTGAGTCACCCCACTCTGCCCATCACCATCACGGCCCAGGAGGACCGACACATCCAGTTCTTCGACAACAACACAGGGAAATGTATTCACTCCATGGTAGCCCACCTGGACGCAGTCACCAGTTTAGCTGTGGATCCCAACGGCTTGTACCTGATGTCTGGCAGCCACGACTGCTCCATCCGCCTGTGGAACATGGAGAGCAAGACGTGCATCCAGGAGTTCACAGCGCACCGCAAGAAGTCGGACGAGGCCATCCACGACGTGGCGTTCCACCCCACCAAGTGCTACATCGGCAGCGCCGGGGCCGACGCGCTTGCCAAGGTCTTCGTATGACTGCAAATCCCAATGGCTAACAGCTGCGTCCGGCTCGAAGGACCATAAAAAAGGGGATTAGGTGTGGTGTAActaaagggagagatggaagttGGAGCCCAACTCCAAGGCAGTGTGGAAGGAAATGTAGTGAGGTGAATGGGTAACTAGCCACTGGTGTCTGAGTCTCAACCAGTGGCAGTCTAGAGTGAAGGTTAGACACCTGATGGTTTGAAGGCTGAAAGGGGTGAACGTTTTGAGAGAAGGCGGCTACTATCCTTCCACCGTATACTTCctgtcctacacacacactccccagcTAACCCGGGCGGGCCTGGGTGCTACAGCCAAACCAGGAGGAGACCAGTGGTCAAAGACCAAGTGGATATCCAGGAAATTCTCAAGACCTGTACTCTCATTTAGAAACATTGCATTTGTTTCCTAACTAACAGAAACACAAGACTCATATTCtgcacccccaccccaccccagccACCCCTAAAGACTGCCTGTGTCTTCAATGTCGTCATTTTCAAAGATTTCATGAAAATGTGCCTTTTTCGTCAGTCTTGCAAACAACGTTATTTTACAGTTTGTGTGCAACGTAGGAGATTTTACAGTTTGTGTGCAGTGTAGGAGTGGGCAGGGCGTTCAACAACAAGTTATAATTTATTGTCCAACATAGCACTGGACATTGTCTCTTCCATTTGATCCATAAAACTATGTTTGAAAATAATTATTTTAATCGGATGTACACAGCATATGTATGGCTAGTGGTCAATGTCACAGTACTGTTTCAATTATTGAACGAGGGAGTTGGGATCCACAATGCCCTCCAATCCActgaaatatacagtagtgtgcaGAACTGGAGTCCCCCTCAAAAAGAAACATTGAAAAGAAGTTTAAAGTAACCTGAAAGTCAGTTTGAAGTTGAAGTAAAGGCCAAGAGGCTGCATTTCCTTGATGTGTGATTTATTAtagccttttttttttacatgtcaaTGTGGTTTTGTATGTAATCACAACCAATTGGAAATTACTCCATTATTTCGTCTCTTAAACAAGTACAAATGTAGCTTTTTAAGTAGTGCCTATTGTCCACATACTTGTTTTGCGTCATCTTGAAAAGCCAACCCCATGAAAATAATTGAATTGTTTAATGAAACTGTGCTAACACAATTCCTACTTATTAGCCCATATAAATCTGTCACCTAAGTGAGAAGCCGTCCTTGTATTCCAGCTTGCTTTGCTTCGGTGTTGAATCAGTGTCCAGATCTGAATTGCCTGTACACAGCCAAAACACTGACTTAACCAGGCCACATCCTTTCTTAAACTTAATTTAGTTTCCAATTAAATTGTAAATGCTTTTATGCTTCAGTTCTCCTAGGTACAAGGAGTGCCTATTTGGTGTTTGGATGTTCCATTCTTTACGTAAATAGGACAGCAacattgtaatgtactgtagcaATATAAGTAGAAGCGTTAACTCTTAACAAGAACTGGCCTGTGACAATTTGCTAGCAGTAGATCAATTTCTCAAACTTTGTTTCACAATTTAACAGAATTGATTGATCAATGTTGTGGTTTGACCTAATTTGAATACATGCTGCTTTATCATGCATTTATAGTTGAACCAGACAAACTGCACTGAAAATGGTTTGCAGTGAAACAATTATTAATTTGATTGTTTTTTTCATTTGAGCTGTGTATTTATGCCTCTGTGTCATTTAAGCCAAAATAATCAACCAAGTATTGTCTTACAATGACAAGATGCTTCACAGAGAGCCTGCAGATGGGACGTTTCCTGCAACTGCTAAATTGGCTCTTTCAGCTTATTAAGTTAGCTCTTTTTCTAATGCTAAGTTAATGCTAATGCCAAGTTAGCTATGACTGCTAAGGTAGATTCTTCATAGATATCCTGCTTGCCACTGTGCTCAGTTAGCCCCTTGGCTCCCATTTTAACTGCAGAACTGAGGTCTCTTAGTACTCAACTGTGTTTAGGCGATATGACCAGCACTGGTCAGAAAGCAGGGTAAATGCTTTATGTAATAACTGTTTGAAAATAGAATTTTGTCTAATTATTTTGAGCAATTACTAGTTTTTTTATTTACTATACATGGTTGGTGAAAAAGGTAAATCCTTGTTAAATACAGGtagatatttttttaaagaatattttCTGTTTTACTTGAACATTTAGGAGTTATTCCTTGGGATTTGTGTACTTAGTTTTTTTTGTAGTGGAATGGTTGGAGATTTGCCGGTCTTATCAAAAGTGATGCCTTTGGTTGTGAGCACTACAAAACAAGACAGATTTAGTCATTTATTCTCCAAGTTGTCTCATCTGCAGTTGAACAGTGAGAGATTAGGATTTCGCTATCTACCAAATGCTTTGGTCTAAAATAAGGACTGTTGAATGATGAGGATGGATCAAAATCTGTGGGGAATTTGGTGTGCTTGCGTTGTACAAAgatcttttttttatttactttggtGTCAGGTAATTTTAGACAATGTAAGGGAGAGAACAAAAACGTGTACAGTTAAagtataaaaaaacaaatatttattaACACAGTATATTGAGTGGCTAAACATGGTGATGTGAAATGGTGTCAGTATGTATGGTACCCTTGTCGTGGTAAACGTACAGTAGTCTCATCACAACACTGAGTAGTTGAACAAAAGAGGAGTTGGTATAGGGCCCCCTGCTGCTCACAATGTGGAAGAACCATATTTCAGCAGGTTGGCTCTCATTTCATGTCTTTTAATGGGTTATGTCCATGACAGAATAATGAGGGCTGACCATAGGctagtgttttgtttgtgtgtttttggtcGTAGAGAACAACTTTTTAAATACTAGTCTTCTCCAAATCAGTTTGATTGAGCTGTCGTTTTTGAGACAGTGTGTCTATCATGACTGCATACTGTCGTCAattggaataataataataaccaagcAAACAGTGGTCCTCCAGAACCAGGAGTCGGACAAGAACTAGGATTTGAACAAAGAATTATTGTACTGTGATAGGCAGTGTTAAAGCAGAATGCTCTAGTCTAAATAGTGACTCATATATGCGTCAAATTCACTTGTCCATTCTGAGCAGCAGGGGGTGTTGCTTACGAGCAATACAAAGTGAATGAGAAGAGATCACACAAAACAAAGAACCTATTAATAACCAATGGGAAAATAAACAAGTCCTGGGCGAAACCAAGTTTGCCAATTGTAAATCAAAAGTAATTCCCCTTTTAACCTCCAGTTGTATAGAGAATTCTTTTAAGATGTGAATTTGATAAATATGCTAATTggactgtacatacagtacatataattATTGTCATTATAGTTTATTCTTTTTTCATGATGTATTGTATTTTTTCTCAGATGGGAGATTGACAGATTtatcaataacaacaataaagGAATATGTTGTATATCATA

Function

GO: NA

KEGG:

id description
K17608 STRN1_3_4; striatin 1/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1319642 lncRNA upstream 69723 24833957 ~ 24834328 (+) True G1157172
TU1319641 lncRNA upstream 70388 24833405 ~ 24833663 (+) True G1157171
TU1319640 lncRNA upstream 71217 24832330 ~ 24832834 (+) True G1157170
TU1319635 lncRNA upstream 76656 24827160 ~ 24827395 (+) True G1157165
TU1319633 lncRNA upstream 78237 24825548 ~ 24825814 (+) True G1157163
TU1319747 lncRNA downstream 823 24997259 ~ 24997471 (+) True G1157266
TU1319763 lncRNA downstream 24930 25021366 ~ 25021662 (+) True G1157282
TU1319765 lncRNA downstream 27037 25023473 ~ 25023834 (+) True G1157284
TU1319767 lncRNA downstream 29826 25026262 ~ 25026465 (+) True G1157286
TU1319822 lncRNA downstream 74206 25070642 ~ 25071023 (+) True G1157309
XM_036940684.1 mRNA upstream 185514 24707147 ~ 24718537 (+) False LOC110486034
XM_021557343.2 mRNA upstream 279863 24554945 ~ 24624188 (+) True LOC110486033
XM_021557339.2 mRNA upstream 381548 24484604 ~ 24522503 (+) False LOC110486030
XM_021557340.2 mRNA upstream 381548 24485916 ~ 24522503 (+) True LOC110486030
XM_036940681.1 mRNA upstream 427964 24468082 ~ 24476087 (+) True esf1
XM_021557350.2 mRNA downstream 51405 25047841 ~ 25065592 (+) True LOC110486039
NM_001124613.1 mRNA downstream 75116 25071552 ~ 25072676 (+) True iip
XM_036940686.1 mRNA downstream 94129 25090565 ~ 25091740 (+) True LOC110486040
XR_005035506.1 mRNA downstream 97109 25093545 ~ 25104730 (+) True LOC118938245
NM_001165249.1 mRNA downstream 105088 25101524 ~ 25102652 (+) True ifm3
TU1319586 other upstream 139705 24764102 ~ 24764346 (+) True G1157117
TU1318573 other upstream 575088 24326783 ~ 24328963 (+) True G1156247
TU1318398 other upstream 900083 23998646 ~ 24003968 (+) True G1156089
TU1318207 other upstream 1305048 23595918 ~ 23599003 (+) True LOC110485992
TU1317569 other upstream 1332271 23511926 ~ 23571780 (+) False pitpnc1a
TU1319792 other downstream 105104 25101540 ~ 25105138 (+) True G1157292
TU1320347 other downstream 416673 25413109 ~ 25414981 (+) True LOC110486053
TU1320533 other downstream 466491 25462927 ~ 25463458 (+) True G1157952
TU1320563 other downstream 476686 25473122 ~ 25473978 (+) True G1157972
TU1321019 other downstream 860196 25856632 ~ 25871403 (+) True LOC110516920

Expression Profile