RNA id: XR_005035506.1


Basic Information

Item Value
RNA id XR_005035506.1
length 2035
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC118938245
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25093545 ~ 25104730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaagggggccgaatactttcgcaaggcactgtacatatcctGACATGGCTTGTCTTTGTTGTCGCTCTCCAACCAAGTTTAAGCCACAATCTGTACTATTTATGGTTGGTAAGATGACTTGTCCTTGTGTGATATAAAGATGTAGGAATTAGAGTATGTTGAACAACTTTATCAACCCCAAGAATGAACAGTATTAGGTGTTTTTGACCTATTACTCTGATTCAACATCTGTTAATAATTTGTTAAAGTGGAATTTCCAGCAGTGTTGAAAGTCCAGGCCTGGTTTCCGGAGACAAGCTATGTCACCAGGAATCCCTGGCTGGCTGTGTACTGTGGTACTCTTGAATATCTATTTTCCCTCTGGAGAAATATGCTGTGTAGGTttgatgggtaaaaaaaacactATTCAATTCATGGCCCTGTTAAAATACTTACATTTATCATTCAGCAGGGCTTGTAACAAGGATGCAAATTTATAGGGATTCACACAGGTTTCCTCTTGTCAGTATAGTTCTTGAAGGAAAGCAGATCAGTAGAGTGAATTGAACTAGATCAGATGATTGGGACAAAGCTAAAAATAAATAGTGTGAGCTGGGGGCCATTTTCAGGCTCCTTGCAAAGCtcgatagcctgcagagttctgggCCCTTTCGGGGCTAAAAGGAGGAGGAGACTATGGCTTAATGTTTttatgccaagagtgtgccaagctgtcatcaaggcaaagggtggctactttgaagaatctcaaatataaaatatatttagagttGTTTCAAAGGATCGGGTtccttttttaaaactttttctcTTATGTAATATGATatatccaaatctaactgcctgtagctcaggacctgaagcaaggatatgcatattcttataCTTTTATttagtaccatttgaaagaaaataatTTCTAGCTGCCATCCATATGTTtccactgtgctgtgatgtttcaaaAACCTTTATAATCTCAGAGTATTATATGATTGATTGACTTTTCCAATCAcacagcagtgctatttgcagagttagctgcaagtaaatgttgcaatttttcTGCCTTTCCTGtgcctgcgaccaaaaacaagctgcATATGGGCATTACCAcaagtgatctaatgattctATCTCTTCGAAGCACAAtgtgcagagctgggatggttgtatcccccatctataacattctattagttgcaagaattttgtataataatttaaatagaaAAACTCAACATTTTGAATCTGTCAtcattttgtgtatcagttcataaaccatgtgccatggaattggtacattgaaaatctcctcccaactattttgcaacctTTATGGTGCAGCTGtgaattttttggtccttaaattaaacaggtatactttattatttataaaaaaaatgtgtttagccTATTTTGCTCTTTAATGCTGGGCCGACAAACACATTCCTTACCTTCTCCAcgttccacttgcctcctccgtgtttgcggtaatgctgcaaaCAGTTCGTTGTCattttggatagagcagacatttccacaTTTCCCTACAAACTATGGGTATTGATCATATTCCGGCCTCTAATAGAAAAGGGGGCCCATCTTAAACAGTTAAACCATGGGGAAAGTTttgggatttacaaactacaggccactaaataccctggtttaaatgaagatatggatttctcaCCCTTCCTGTAGGGTCGTGATGGATCCATTTGCTGTCATCTTGTGGACATTTTGCTCAATTGGCCTCAGCTATGGTTagactgttgttgttcatgttttgctgtgttctagtgtactatggaatatatagctttcttattcttgacacttctcccagtcatatttaaggttagaactaccttttagtgttctgatacttctagtttggagttgtatttttatgataacatagctacagtatttcaccttttaatgtgtatagtattgcttactaggtgtgtccaatcaattgtgtaaccactccctcttccaatTAGGGCTAATTGAAAAACTTAAAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1319787 lncRNA upstream 7135 25082584 ~ 25086410 (+) False G1157292
TU1319822 lncRNA upstream 22522 25070642 ~ 25071023 (+) True G1157309
TU1319767 lncRNA upstream 67080 25026262 ~ 25026465 (+) True G1157286
TU1319765 lncRNA upstream 69711 25023473 ~ 25023834 (+) True G1157284
TU1319763 lncRNA upstream 71883 25021366 ~ 25021662 (+) True G1157282
TU1320160 lncRNA downstream 87628 25192358 ~ 25192584 (+) True G1157617
TU1320195 lncRNA downstream 91615 25196345 ~ 25196646 (+) True G1157643
TU1320205 lncRNA downstream 101733 25206463 ~ 25206703 (+) True G1157653
TU1320221 lncRNA downstream 116086 25220816 ~ 25231496 (+) False LOC110486047
TU1320220 lncRNA downstream 210319 25315049 ~ 25315372 (+) True LOC110486047
XM_036940686.1 mRNA upstream 1805 25090565 ~ 25091740 (+) True LOC110486040
NM_001124613.1 mRNA upstream 20869 25071552 ~ 25072676 (+) True iip
XM_021557350.2 mRNA upstream 27953 25047841 ~ 25065592 (+) True LOC110486039
XM_021557349.2 mRNA upstream 97109 24904051 ~ 24996436 (+) False LOC110486038
XM_036940685.1 mRNA upstream 97109 24904051 ~ 24996436 (+) True LOC110486038
XM_021557359.2 mRNA downstream 36469 25141199 ~ 25143963 (+) False LOC110486044
XM_036940688.1 mRNA downstream 36839 25141569 ~ 25143963 (+) True LOC110486044
XM_021557360.2 mRNA downstream 63435 25168165 ~ 25188384 (+) True LOC110486045
XM_021557361.2 mRNA downstream 115806 25220536 ~ 25319211 (+) False LOC110486047
XM_021557362.2 mRNA downstream 115806 25220536 ~ 25319211 (+) False LOC110486047
TU1319586 other upstream 329199 24764102 ~ 24764346 (+) True G1157117
TU1318573 other upstream 764582 24326783 ~ 24328963 (+) True G1156247
TU1318398 other upstream 1089577 23998646 ~ 24003968 (+) True G1156089
TU1318207 other upstream 1494542 23595918 ~ 23599003 (+) True LOC110485992
TU1317569 other upstream 1521765 23511926 ~ 23571780 (+) False pitpnc1a
TU1320347 other downstream 308379 25413109 ~ 25414981 (+) True LOC110486053
TU1320533 other downstream 358197 25462927 ~ 25463458 (+) True G1157952
TU1320563 other downstream 368392 25473122 ~ 25473978 (+) True G1157972
TU1321019 other downstream 751902 25856632 ~ 25871403 (+) True LOC110516920
TU1321282 other downstream 1005766 26110496 ~ 26115864 (+) True G1158563

Expression Profile