RNA id: XM_021557361.2


Basic Information

Item Value
RNA id XM_021557361.2
length 6925
RNA type mRNA
GC content 0.44
exon number 24
gene id LOC110486047
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25220536 ~ 25319211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGGAAGAGAGGCTCATAATGGAATATGTCGGGCTTCCAATTGCCTGTAATTATTCCCGGAGCGTCCGCATCCATTTTCGGTGTCGTTCAATGGGACTGTGAAGCAATTCGCCGCTTTTTAAACTTTTGCAACAAAAAGCCCATAATGGATTTCAAATATGTTTCTGACGCTTCTCAATAGCTTACTCTCGTGAGGCTGATTGCTTGGTTTCTAGACCTCGTCACCTTGGTGGTGGAGTTGTAACGATATATTTAGCCTATCGCGTTTGGGGTATTGCCATTGGAGAAAGAGAAGACTCAAACGGAACATCAAATTGGATTGCCAGGTTCCCAGGAAGATGCGGCTGTGAGCTTGCTCAGAGTGCTGATCCTGTGGGTCTTCACCTGATCGTGACCATGGGGATATGGCCAGGGGGTGTCCGGGCCTGCATTGCAGGCCAGGAGAACTGCTCTGCCAACAATGAATCCAAGGACTACTGTTACTCCGCCCGAATCCGCAGCACCGTGCTTCAGGGCCTACCCTTTGGAGGCGTCCCCACAGTCCTTGCGCTGGACTTTATGTGCTTCCTGGTGCTTCTATTTGTCTTCTCAATATTGCGGAAAGTGGCCTGGGATTATGGACGCTTGGCATTGGTGACAGACGCTGACAGATCGAAGAAGTGTTTCAGCGGATTGGAGGAGCGGGAATATGATGCCTCAGCTCTGCATTCTGAAGCGCCAGACCGCTATGAACGTCTCACTTCAGTCTCCAGCTCTGTCGACTTCGATCAACGGGATAAAGGCTTCTGTTCCTGGTTAACTGCCATCTTCAGAATAAAGGACGAGGAGATCCGGGAGAAGTGTGGTGAGGATGCTGTGCACTACCTTTCCTTCCAGCGCCACATCATCGGCCAGCTTGTGGTTGTTGGGGTTCTGTCTGTGGGCATCGTCCTGCCGGTCAACTTTTCTGGAGACCTTTTGGAAAATAATGCATACAGCTTTGGGCGGACCACTATAGCAAACCTGAAGTCTGGGACTAACCTCTTGTGGCTCCACACTTCGTTTGCATTCATATACCTGCTTCTGACTGTGTACAGCATGAGACGACACACTTCCAAGATGCATTACAAGGAGGACGACCTGGTGAAACGCACTTTATTTATCAATGGGATCTCCAAATATGCCGAAGAGGTCCACATAAAACAACACTTTGAACAAGCCTATGAGAACTGCACTGTTCTGGATGCTCGAATCTGCTACAACGTAGCCAAACTCATGTCCCTGAATGCTGAGAGGAAGAAGACAGAGCGCAGTTTAAAGTTCTTCACTGATCTCATGGCCAAAGAGCACATGCCCACCATGGTCAACCCCAAACCCTGTGGGCACCTCTGCTGCTGTGTCATCAAAGGCTGTGAGCAGGAAGAGGCGGTGAGCTTCTATACTAAGCGGGAGGCCAAACTGAAGGAGGACTacagaaaggagaaagagaaggtcAACACCAAACCCCTTGGCATGGCGTTCGTCACTTTCCAGAATGAGGCCATGACCGCAATAATCCTAAAGGACTTCAATGCCTGCCAATGCCATGGCTGCACTTGTCGCCAAGAGCCCAAGTCATCCCAGTTCAGTGAAAGTCTCCACGTCTACAACTGGAGTGTGAGCTATGCTCCTGACCCTCAGAACGTGCGCTGGGAGCACTTATCATTGGGAGGGATTTCCTGGTGGATTCGCTGCTTCATCATCAACTGCATCCTTTTCCTCCTGCTCTTCTTTCTCACCACGCCCGCCATCATTATCTCCACGATGGACAAGTTTAACGTCACCAAGCCTGTGGAGTATCTCAATAACCCCATCATCACCCAGTTTTTCCCCACTTTGCTGCTGTGGGCTTTCTCTGCCCTGCTGCCGACCATCGTCTACTACTCTGCTTTCTTCGAGAAACACTGGACGAGATCAGGGGAGAACCGGACCACCATGCACAAGTGCTACACCTTCCTCATCTTCATGGTCCTCTTGCTGCCTTCACTGGGTCTTAGCAGtttggatgtcttcttCCGCTGGCTGTTCGATAAGAAATTCCTTGCTGACGCCACTGTCAGATTTGAGTGTGTCTTCCTCCCTGACAACGGAGCCTTCTTCGTCAACTATGTCATCGCCTCGGCGTTTATCGGTAACGCCATGGACCTGCTGCGGATTCCAGGCCTGCTCATGTATATGATCCGACTGTCCCTGGCCCGTTCCTCTGCAGAGAGGCGCAACGTAAAGAGGCATCAAGCGTTTGAATTCCAGTTTGGAGCGGCCTACGCCTGGATGATGTCCGTCTTCACTGTAGTTATGACATACAGCATCACCTGTCCAATCATCGTCCCCTTTGGTCTGATGTACATGCTGCTGAAGCACCTGGTGGATAGATACAACATGTATTACGCTTACCTTCCCTCGAAACTGGACAAGAAAATCCACTCCGGGGCTGTCAATCAGGTGGTGGCAGCTCCCATCCTCTGTCTCTTTTGGCTGCTATTCTTTTCCACCATGCGCACAGGCTTTGTGACCCCCACGTCCATGTTCACTTTGGTGGTCCTAATCATCACCATTGTGGTATGCCTGTCGCACGTCTGCTTCGGCCACTTCAAGTACCTCAGCGCTCACAACTACAAGGTACGGGTCACTGTGCTCAAGATTGACACCAAGGAAACAGATGTTGACGTGGTTGAAAATGGCCGCCCACCACTCCGCACCTTCTCCGCTCCTTCTACTAAGTCTCAGCAACCAACGTACATTGCCCAGGTCTTACGGGACCCAATCACGGAGGACGCTTGCACAGGTAGTGGGGAGGAAGATCGGGGGTCCTCACAGGATGAGGAGATGATCAACACTGGGAATAGTCTCAATGAAGCCGATTTCCAGTCTGGTGAAGACAGCCTCATAGCCAACGAGGTCCACCAGTAACACTACCAGctgagaagggagaaagagagaaagatggtgAGAGAGGGATTTTGGAGAGGATGAATGCCAGACACAAACAAACCACCAACTTCACTTTGTATTCTAAAACAATCTGCAGTCATTCCTCCCCTATGCTCACCCACTctgtcacttttttttttttttggttgtgCCTCTGCACATTGGCATTACCGgaaaatgccacacacacacacacggtgtaaTTGTCTAATTTGGAGCTTGTCTGTACGGATTCTTCAAAGTCCCCTCTCAGTGTATTTTGAACACCTATCTGCGCGATATGAATCTGGGTGTTGACGCcccttgttttatttatttatctactGGAGTCCTACACTTTTATGGAGCTACTATGGAGCACAAGTCCAACACTGGTTTTCATCAAACCCAAAAAGATGTAGTCCCAGGAAGAAAAAAACATACAATAGCCTAGACTTTGTACATATCCCAAAATATACCAACCCATTTTTGTCTCTCTTATTGGGAAGAGGGGGGGTAAAAATTGTGCCTGGTTTGAGTTTCTTTTCATCCACGTTTCCTTACTTGTGTGTCTAACTACTAAATCCCCATCAGGGTGGCTCAGGACTGGTGGAGAGGTCAGGAAAGTTAGGCTACAAGGTCTCCAATGAAGTCTTGCTCCAAGCACAGGGCCCATTTAACTTTTATGGGTCTACAGACTCACACCCAAACTAAACTTGGTTCATTCTTGTCAACGTGCAAAGCACCCTGCATTAGGTCTTCTTTCTCATTAGTTTATGAACAAAATGACTTGCTTGTCCCTTTTTTCATTGATGTCTTCTGTTTGTCATAAGATATTCACTCTGCCACTGAAAATCCTAGTCAGTGGTTGGAGACACCATCTTTAACATGACGTATAAAAAGATGATGCAGTCGCTcaagttcttttttttttttaagtgtttacTTCATGTGTCTCACGTCACTGAATGGGCAGTGTTGGAGGATATCAGGGCCATGACATCGGCCCTCTATCGTGTCATAAGACATTCCAAAGACGGCTTTGAGCATGGCATGCCAAACAGCCAACCTGCCAGTCTCCGCTCAGTTGGATTGTGGTATTTCTGGTGTGATTTGTTGTCATGACATTTGTCTACAGTGATGACTTGTCagtctctctgctcccctccatCCTGTCCTTCTCAGTTTCCAAAGGGTCAGTCATGGATAGCTTGGGGACTCTTGCAGCCACTGATATTGTacagttttttaaaatgttttctttttgttttttattttacctctACTACCTTAAACATATGGACATCTACACCTGAAATAGGAAGCAAATGTTCTTGTCAGCGCATAGTTCAGTTGTCAACTTCTACTGTGAGTTCTGTTCACCTTGATCTTGAACATTTGCACAATCTTTCAAAAGTTTAGCTTGAGTTGTAGATCCATGGAAAAGCAGTGCTTTTGCACTTGATGATCTACCTTTTAAGCCTGGAGTTTTCAGCAGGCCTGTGAGAAGGTATATGGGTCCTGTCTGTGTTTAAGTGTGCACTAACAGTAGATCAAAACATGAGAACGCCAAACAAAGTTGCTAAGGATTTAAACAttaacagacccccccccccatattctTTATTATTCCTGATTCTTGCAATGTTTATATTTACTTACAGTTGAAATTTGGAGAGGGGTCAACTACAGATTTTAATCTATAAGTAGGAAAACAATTGTTTTACAATGACTTTCATGCGCGTGAGCattgtgtttgtttattttttgtagTCAAGCCTTGTCTTTCGTCCCACAGGGAACAAAAAACAAGGTTTAAATTGTGAGTACCCACTTAGTGTTTGTTGACTATGGTCATCTACTGGTGCCTGTTCTTTTGAGTCAAGAAGTGTTCAAAGATAAACtagatctggggggggggggggggggggggggcactgggAGACATGAAGAAACTGGTCTTGCCTCAAGTTGTACACTCTACCCTTAAAATCTTACAATCAGAAGTACGCTGAGGTGAGCTAATGCATCtctggaggagccaagtcccaatGAATTAGCTGTTTTTCTATGCTTCCTCTCAGAGGCAATAGTAATGAAGTGTAGATGAACAAAATGTAGCCTTAGTAAAGTATTTTGCTCCTCAGGAGTCATACTTATGTAAGATCATTTTTCAGATATACAGCACCAATGAATAGCGATGCTTCCATTTATTTTTGTCACATCAGTTTGGGTGCAGTGTGTTTTCATGCACTTAGATGCAAAGTATCATgaagttgtctctgattgaagtGCAATCAGTCAGATGCCCGGTTGAGAACAACATGGCATCATGGGCTGGCCCTTTTGGCTTAGATGTCGGCCATCTTTGTTTTGCACTTTCTGGAACAGAACTGTGGTATTAAGGCCAGAGTCTATTTTGGCCCTCAGCCTCTTTTCTCAGCCTGCATAGCAACTACCCCATTTGGTGTTCAGTTATACTCTGGGAAATTGTGATGACATTTCAAAGCCAGTGTGCACTTTCTTTTCTAAATGAACATCAAGCGCAAAACACATGAAGATACAATCAAATACTTCCATAAAAGGCATTAGGTAGAAATAAATTAATGCACAACTATGTATATAATTTCATATGTCTTAAATTACCACAATTTCATGAATTTGATTTATATAATCCAAAACAGAAAAAAGTGTATAACAGAACAAAAGCGGAAATAAATGTCACTTTCCAAGAGTAATAAATCACTGGGTAAGTATAATCAATATACAGTAGTGATGGCTCATTCGCCCTAGTAGCTCCCTAATACTGTTAAGTGGAGCATTCAAAGTATTGCTTTATAAACCTAGCCAGTCCTTTCAGATATGCGAACACCATAGGGATAGGGCCAAATGGAAGAGACTACGGACCAAAAATTGACCAAGTGTGGCTGCACTGACTAGTCCAACCGATGAGGTGCAGTGATCGTGAAGGTCTGCTAGAGGTCACTGTatagctgtgtttttgtattaCTATAATTAGTCATTCGTTTTTGTATTTCATCTCTGTGCAAAATGATTTGTAACGAAAAAAAGGATGTTTTACCAATTTGCATCAGGAACATACAAGTGCGACAATCAGCAAAGAAATAGAACTAGAGCAGTCTCAGGtgtacttgtttttttttatgtttacatctgtttgtttttttacattgtattAGTTGTTTTCAACTTTGAGCGTTTCGATCTGTTGACGAAGCTAATCTATGAAAGCTATGGCTATTGGTAACATTCCATCAGAGGAAAAATGAAAACATGTACCATGGTTGTCTTGTTATTAGCAGCACATGTTCCTCTGTAGACACACTGAAATGACCATTGTATGGTGGTTTGTCACCTGTTTGAAAACCATTGCTCCATGCTGGATATATTGTCGCTTTTCTGTGTCTACCCTGGTCTGTAACTTCTGTTTCCCTTTAAGTGAGTGTGCACTAACACTATCCAGTGAAAGTACATTTTCCTGACACAATAAGACATATTTTAAGAGACTTGCTTGCTAATAGACAGTCTATTTCTCAATGGAAATGAAGTTATTTTACAGCAACACTATTCTATGGTGACAAAAAAGGCTTTGGGATTCAGGTAAATCGCAAAAGGAACTGTGTTCAGTGACACAGCCTATTCCAGATGTGATACCGATGTATGTATTATATTGATAGCTGTGACAATGCAGTTACATTTATtggtaatttttttatttatcatgATCtgagtttttatttaattttatattTGTTGCTTAGGATTTAAGTTGTGAAAAGAAGAATGTGATCTAAAAAATAAACGTGTCAAATGCTCAGAAGGATTGGGAATGGTTTGCTAAAAGTTTGTTTAGatttcaatatatatatttttgtaaatagCCATCAAAATTCACTATTAAGTTATGGTAGTGTTATAAAGTACATCTACAGTTTCTAATAAAGCATGAATATGGGTAGGGCTACGTAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1320205 lncRNA upstream 13833 25206463 ~ 25206703 (+) True G1157653
TU1320195 lncRNA upstream 23890 25196345 ~ 25196646 (+) True G1157643
TU1320160 lncRNA upstream 27952 25192358 ~ 25192584 (+) True G1157617
TU1319787 lncRNA upstream 134126 25082584 ~ 25086410 (+) False G1157292
TU1319822 lncRNA upstream 149513 25070642 ~ 25071023 (+) True G1157309
TU1320219 lncRNA downstream 3016 25322227 ~ 25322831 (+) True G1157667
TU1320314 lncRNA downstream 36096 25355307 ~ 25355533 (+) True G1157746
TU1320313 lncRNA downstream 43707 25362918 ~ 25363325 (+) False LOC110486051
TU1320319 lncRNA downstream 44697 25363908 ~ 25364184 (+) True G1157751
TU1320323 lncRNA downstream 53453 25372664 ~ 25372916 (+) True G1157755
XM_021557360.2 mRNA upstream 32152 25168165 ~ 25188384 (+) True LOC110486045
XM_021557359.2 mRNA upstream 76573 25141199 ~ 25143963 (+) False LOC110486044
XM_036940688.1 mRNA upstream 76573 25141569 ~ 25143963 (+) True LOC110486044
XR_005035506.1 mRNA upstream 115806 25093545 ~ 25104730 (+) True LOC118938245
NM_001165249.1 mRNA upstream 117884 25101524 ~ 25102652 (+) True ifm3
XM_021557366.2 mRNA downstream 43618 25362829 ~ 25376101 (+) False LOC110486051
LOC118938060 mRNA downstream 71285 25390496 ~ 25392938 (+) False LOC118938060
XM_021557367.2 mRNA downstream 76920 25396131 ~ 25404252 (+) True LOC110486052
XM_036942410.1 mRNA downstream 91658 25410869 ~ 25419361 (+) False LOC110486053
XM_021557370.2 mRNA downstream 121904 25441115 ~ 25455367 (+) False LOC110486054
TU1319792 other upstream 115398 25101540 ~ 25105138 (+) True G1157292
TU1319586 other upstream 456190 24764102 ~ 24764346 (+) True G1157117
TU1318573 other upstream 891573 24326783 ~ 24328963 (+) True G1156247
TU1318398 other upstream 1216568 23998646 ~ 24003968 (+) True G1156089
TU1318207 other upstream 1621533 23595918 ~ 23599003 (+) True LOC110485992
TU1320347 other downstream 93898 25413109 ~ 25414981 (+) True LOC110486053
TU1320533 other downstream 143716 25462927 ~ 25463458 (+) True G1157952
TU1320563 other downstream 153911 25473122 ~ 25473978 (+) True G1157972
TU1321019 other downstream 537421 25856632 ~ 25871403 (+) True LOC110516920
TU1321282 other downstream 791285 26110496 ~ 26115864 (+) True G1158563

Expression Profile