RNA id: XM_036942386.1


Basic Information

Item Value
RNA id XM_036942386.1
length 3119
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110516920
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25813029 ~ 25872772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttctttcAACAGCACAACAGTTAGTCAGACACCACGGTTGCTTGCTAGACAAAATAGCCGAACCAATAAAGCTCGTTAGACGCTTTAGTGTATATTAGCCACTGTGTTTTAAACCCACTATTGTCGTATAGTTAGTTATCCgatttattttcatatttacgttgttgttattagtcagtTAGCCGACTGGTTtagttagcattagcctagctagctaatatctccgaccatgagttcactaagctACTCTTTTCCTGCTAAAGAAGGGGAGGTCTGCTGGACAGAGAAAGAAGCTCCCGTGAAAGAGGAGGACGAAGAGGTGGATATCTcagtaaaacaagaagtagaggatgaggccgttactgtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgcagtttatggagtgaaagaggaggaggaaactggatatctgggcccggtttcTCAAACGCATCTCAATAAGGCATCcaatggttctaacgatgaaTTTAGCCATAAGATGGTTTTGAGAAACCGTTccctgattaacactagagtgATACGGGACTATcatggatcctctggggagcctcaacaacctcatgataatgacgaggcagagaagagtctctccagatcagaactccTCAAGAAACACCTgcagagacccacagggaagaTAATTCAccgctctgactgtgggaagagattcacctcATCAGCAGGCATTAGAATTCAGCAGAGAATCCACACAGTAGTGAAATCTTAttgctgtactcaatgtgggaagagttttaaaaCATCTAGCCATCTTATtgtacaccagagaatacacacaggagagaaatcttatagctgtgatcaatgtgggaagagttttattcAGCTAAGCAACCTGATaccacaccagagaatacacacaggagagaaacgttatagctgtgatcaatgtgggaagactTTTACTCACGTTAGCACCCTGATATCACAccggagaatacacacaggagcaAAACCGTATAGCTGTGatgaatgtgggaagagttttgctagGTCGAGCCATCTGACTCttcaccagcgaacacacacaggagagaaaccttatagctgtactcaatgtgggaagagttttactcattcAACCAGCCtattacaccagagaacacacacaggagagaaaccttatatctgtgatcaatgtgggaagtgtTTTACTCAGCTAAGcagcctgatatcacaccagagaacacacacaggagagaaaccatacagctgtgatgaatgtgggaagagttttactgaGTTGAGCAGTCTGACtgtacaccagagaatacacacaggagagaaaccctttagctgtactcaatgtgggaagttTTTTTATACATCTAGCCATCTGAAGATACACCATCGAAGACACACAGGAGATAAATCTtatagctgtactgtatgtgggaagagttttgttcaatCTGGGGGACTGAAGgtacaccagcgaacacacacaggagagaaaccttatagctgtaatcaatgtgagAAGAGTTTTGTTCGATCTGGGGAACTGAAGATACAtcggagaacacacacaggagagaaaccctatagctgtactcaatgtgggaagagttttgttcaatCTAACCAACTGAAGATACACcatagaacacacacaggagagaaaccttatagctgtgatcaatgtgaccagagatactctgataaaagatatctgattaaacatcagaaaatacatgcaTGAAGGAGTTTTTTTCATGATATCAAacattgtagaaggagtattttaatgtcacaatgtagaatgttttaacattgtaggaGTATTTGGTTGCTGATTGTCTCAAGGGTGGGCAAAAAGTTTTGTGTTTAGCCAGTGCATCACTATTTATTTTGACTGCAAGTTTTTCCGTATTGGAGATGAGTTTTGTTTGGGCTCCTTCCAAggggacgagagttctagaagctagtgagttttaggaggacgagagttctagaagctagtgagttttaggaagacgagagttctagaagctagtgagttttaggaagacgagagttctagaagctagtgagttttaggaagacgagagttctagaagctagtgagttttaggaagacgagagttctagaagctaatGATTTTTAGGATTCTatagaaagaaaaagaaaagatacgattgtatattattatttagaaatacatgttttttcttgtttttaattgttgacagccagtagaaACCATATTTATATTCTAGGAGGTGAAGCATTGTAGTTGGATATAATGTGAAATGGAAGTTCTGTTGGTGGTGCAAACTTTTCCAACAACTGTTATAGGATATATTTGTTGTCTTAAGGGGGAAAGTGTTACtggctttggtttttccatttatgttttgaggttggattTCAGCACGTCTAGCTCGTTAGTACGTATAGCTTGTTAGCACGTAGGGCGCACTGATTTGTGTCACCTCGTTTATCAGTTATTTTGTTTGCCTCCTCTTGGGCCgatttagtgggtctcatggtgggtgacttttatgtcccagttgttgttactagtAAGTGGACAGTGacaaaattgcaagattatgttataatccttttattgcatcaaatggttgttttatgcaacagaatagagggtTCTTAGAACTATAGTGTCTGTGTTCTACCGAGGATGGGCATCTGGGAGAAAACAATGACAGGAGATTTACAATGTATTTTGGGTGATATAACCTAAAGTGACCGCATTCCAGAgtatgagttaatgtttctgttgtctatggtaccagggagagatgaccccagggccagatCCTGGTCTCAACACAGAGTTTTTACTGTTTTTACAGTAGATACTGTCTGCTGAGAATTATAACTATATTTGATAGAAatcatgtaggttgaaaggggtgtatcttggctgtaaaagacctttgtacttttgtATCGTGGCTCTCAATTAATCATCTGGGGGTGATTTGTCCACCAGCCATCATTATCATAGAGCACTTAATTGATTCACTTTATGTGTgcgttgtattgacctgctcccttattattaagtgaataaagatttagATTAAGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321130 lncRNA upstream 8178 25845630 ~ 25848158 (+) True LOC110516919
TU1321131 lncRNA upstream 8665 25846832 ~ 25847671 (+) True G1158424
TU1320989 lncRNA upstream 44253 25787348 ~ 25812083 (+) False LOC118938061
TU1321006 lncRNA upstream 50094 25786960 ~ 25806242 (+) False LOC118938061
TU1321007 lncRNA upstream 54790 25784930 ~ 25801546 (+) False LOC118938061
TU1321200 lncRNA downstream 76239 25949011 ~ 25950030 (+) True G1158491
TU1321128 lncRNA downstream 94092 25966864 ~ 25970954 (+) True G1158422
TU1321259 lncRNA downstream 177026 26049798 ~ 26064387 (+) True G1158542
TU1321245 lncRNA downstream 185951 26058723 ~ 26065157 (+) True LOC110487393
TU1321256 lncRNA downstream 199489 26072261 ~ 26085129 (+) True G1158539
XR_002472478.2 mRNA upstream 6670 25845283 ~ 25849666 (+) False LOC110516919
XM_036939724.1 mRNA upstream 43416 25811878 ~ 25812920 (+) False LOC118938061
XM_036942361.1 mRNA upstream 248934 25499800 ~ 25607402 (+) False LOC110486056
XM_036942363.1 mRNA upstream 248934 25499800 ~ 25607402 (+) False LOC110486056
XM_036942362.1 mRNA upstream 248934 25529977 ~ 25607402 (+) True LOC110486056
XR_005035727.1 mRNA downstream 93835 25966607 ~ 25970529 (+) True LOC110487413
XR_005035721.1 mRNA downstream 172210 26044982 ~ 26048058 (+) True LOC118938446
XM_036942401.1 mRNA downstream 185392 26058164 ~ 26080918 (+) True LOC110487373
XM_036942415.1 mRNA downstream 185934 26058706 ~ 26066334 (+) False LOC110487393
XM_036942403.1 mRNA downstream 215159 26087931 ~ 26095676 (+) False LOC110487386
TU1320563 other upstream 382358 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 392878 25462927 ~ 25463458 (+) True G1157952
TU1320347 other upstream 441355 25413109 ~ 25414981 (+) True LOC110486053
TU1319792 other upstream 751198 25101540 ~ 25105138 (+) True G1157292
TU1319586 other upstream 1091990 24764102 ~ 24764346 (+) True G1157117
TU1321282 other downstream 237724 26110496 ~ 26115864 (+) True G1158563
TU1321331 other downstream 291027 26163799 ~ 26217394 (+) True G1158612
TU1321055 other downstream 1236353 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 1417465 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 1620382 27493154 ~ 27768641 (+) True G1158342

Expression Profile