RNA id: TU1321019


Basic Information

Item Value
RNA id TU1321019
length 1121
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC110516920
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25813029 ~ 25872772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCGTGAAAGAGGAGGACGAAGAGGTGGATATCTcagtaaaacaagaagtagaggatgaggccgttactgtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgcagtttatggagtgaaagaggaggaggaaactggatatctgggcccggtttcTCAAACGCATCTCAATAAGGCATCcaatggttctaacgatgaaTTTAGCCATAAGATGGTTTTGAGAAACCGTTccctgattaacactagagtgATACGGGACTATcatggatcctctggggagcctcaacaacctcatgataatgacgaggcagagaagagtctctccagatcagaactccTCAAGAAACACCTgcagagacccacagggaagaTAATTCAccgctctgactgtgggaagagattcacctcATCAGCAGGCATTAGAATTCAGCAGAGAATCCACACAGTAGTGAAATCTTAttgctgtactcaatgtgggaagagttttattcAGCTAAGCAACCTGATaccacaccagagaatacacacaggagagaaacgttatagctgtgatcaatgtgggaagactTTTACTCACGTTAGCACCCTGATATCACAccggagaatacacacaggagcaAAACCGTATAGCTGTGatgaatgtgggaagagttttgctagGTCGAGCCATCTGACTCttcaccagcgaacacacacaggagagaaaccatacagctgtgatgaatgtgggaagagttttactgaGTTGAGCAGTCTGACtgtacaccagagaatacacacaggagagaaaccctttagctgtactcaatgtgggaagttTTTTTATACATCTAGCCATCTGAAGATACACCATCGAAGACACACAGGAGATAAATcttatagctgtaatcaatgtgagAAGAGTTTTGTTCGATCTGGGGAACTGAAGATACAtcggagaacacacacaggagagaaaccctatagctgtactcaatgtgggaagagttttgttcaatCTAACCAACTGAAGATACACcatagaacacacacaggagagaaaccttatagctgtgatcaatgtgaccagagatactctgataaaagatatctgattaaacatcagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321130 lncRNA upstream 8474 25845630 ~ 25848158 (+) True LOC110516919
TU1321131 lncRNA upstream 8961 25846832 ~ 25847671 (+) True G1158424
TU1320989 lncRNA upstream 44549 25787348 ~ 25812083 (+) False LOC118938061
TU1321006 lncRNA upstream 50390 25786960 ~ 25806242 (+) False LOC118938061
TU1321007 lncRNA upstream 55086 25784930 ~ 25801546 (+) False LOC118938061
TU1321200 lncRNA downstream 77608 25949011 ~ 25950030 (+) True G1158491
TU1321128 lncRNA downstream 95461 25966864 ~ 25970954 (+) True G1158422
TU1321259 lncRNA downstream 178395 26049798 ~ 26064387 (+) True G1158542
TU1321245 lncRNA downstream 187320 26058723 ~ 26065157 (+) True LOC110487393
TU1321256 lncRNA downstream 200858 26072261 ~ 26085129 (+) True G1158539
XR_002472478.2 mRNA upstream 6966 25845283 ~ 25849666 (+) False LOC110516919
XM_036939724.1 mRNA upstream 43712 25811878 ~ 25812920 (+) False LOC118938061
XM_036942361.1 mRNA upstream 249230 25499800 ~ 25607402 (+) False LOC110486056
XM_036942363.1 mRNA upstream 249230 25499800 ~ 25607402 (+) False LOC110486056
XM_036942362.1 mRNA upstream 249230 25529977 ~ 25607402 (+) True LOC110486056
XR_005035727.1 mRNA downstream 95204 25966607 ~ 25970529 (+) True LOC110487413
XR_005035721.1 mRNA downstream 173579 26044982 ~ 26048058 (+) True LOC118938446
XM_036942401.1 mRNA downstream 186761 26058164 ~ 26080918 (+) True LOC110487373
XM_036942415.1 mRNA downstream 187303 26058706 ~ 26066334 (+) False LOC110487393
XM_036942403.1 mRNA downstream 216528 26087931 ~ 26095676 (+) False LOC110487386
TU1320563 other upstream 382654 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 393174 25462927 ~ 25463458 (+) True G1157952
TU1320347 other upstream 441651 25413109 ~ 25414981 (+) True LOC110486053
TU1319792 other upstream 751494 25101540 ~ 25105138 (+) True G1157292
TU1319586 other upstream 1092286 24764102 ~ 24764346 (+) True G1157117
TU1321282 other downstream 239093 26110496 ~ 26115864 (+) True G1158563
TU1321331 other downstream 292396 26163799 ~ 26217394 (+) True G1158612
TU1321055 other downstream 1237722 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 1418834 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 1621751 27493154 ~ 27768641 (+) True G1158342

Expression Profile