RNA id: TU1321254


Basic Information

Item Value
RNA id TU1321254
length 1287
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC110487386
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26087931 ~ 26095676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgtctgtgctgctggtggactacAGCAAAACAttggggctgagtggaactgtgggaggaggagaagagaggaatggatcagatttgactcatcaaagagaaagaccagactcagaggaaccagagccagggacgtccaaaccagcaagacgaCACCAGTGCTCCCAGTGTGAAAAGAGTTTTAAACAGAAAGCACAACTGAAAACACGCAagaaaatacacacaggggagaagccttaccactgctcccagtgtggacaGTGTTTCGTCCGTCCGGGggagctgaaacaacatgagagaatacacacaggagagaagccttaccactgctcccagtgtggaaagagtttcaaaCGGAAAACATGCCTGAAccaacacgagagaatacacacaggagagaagccttaccactgctcccaatgtgtaAAGTGTTTCAGCCAGAAAGCATACCTGAaaaaacatgagagaatacacacaggagtgaggcctcccagggtgcaaagcttttgcccatttaggaagcctgaaagaacacATTAGACTGCACACAGAGGAGAAGGCTTAGAAAAGCTCAGACTTTTGGAAAACATATTACTCATAACAGTCATTTAAACGTCATTAtagaatccacacaggagagagaaattacTTCTCTTAGTGTGTATATTGATatacatcacattgacttaaaattcatcagagaacatacacagtgctcccgttgtcttatattgttgactgacAATGTGTTTACCTGTCTTTACCAGATGAAATTAAGGGGTACAGGGTATactcaaatatatatttgtttgtttttattagaAAACATGAAGTGAATATGGAGTCTGTCAGTTTGAATATAAGTTGtccttttttttaaatctttgcgtgtttatctgggtgtgtcattcctccagcactacagataatcaagtgatatttgtgTTGTgatgcatttgcatttgttccattgttgacatttgcattgtagcccactgatgatttaatgaaatgaaaatgttcagacTCTGTAATGGAAAATGTTAATTATTTGTGTGTCCATATAACTGAGTATGTGACTAACCTTGTGAAACTGTCCTATTATAATCTCCTGTACTTGGGACTATCATTCTGTGTTGCAAACCAGCTGCACCTGCATCCTTGTATGAATAAAGTCCCTCCCAGGAACAGGAAACTATAAAGATATGTGCTAATCACTCAATGCTTCAGGAATTCAGACTGTCTCCACTGTGCTGTGTtactctgttattctctctgagctcagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321256 lncRNA upstream 3992 26072261 ~ 26085129 (+) True G1158539
TU1321245 lncRNA upstream 23964 26058723 ~ 26065157 (+) True LOC110487393
TU1321259 lncRNA upstream 24734 26049798 ~ 26064387 (+) True G1158542
TU1321127 lncRNA upstream 118167 25848644 ~ 25970954 (+) False G1158422
TU1321281 lncRNA downstream 33268 26128783 ~ 26139138 (+) True G1158562
TU1321360 lncRNA downstream 125567 26221082 ~ 26227325 (+) True G1158640
TU1321370 lncRNA downstream 141551 26237066 ~ 26237505 (+) True G1158650
TU1321079 lncRNA downstream 162310 26257825 ~ 26671072 (+) True G1158376
TU1321051 lncRNA downstream 169461 26264976 ~ 26807861 (+) True G1158349
XM_036942401.1 mRNA upstream 8203 26058164 ~ 26080918 (+) True LOC110487373
XM_036942415.1 mRNA upstream 22787 26058706 ~ 26066334 (+) False LOC110487393
XR_005035721.1 mRNA upstream 41063 26044982 ~ 26048058 (+) True LOC118938446
XR_005035727.1 mRNA upstream 118592 25966607 ~ 25970529 (+) True LOC110487413
XM_036942386.1 mRNA upstream 216349 25856336 ~ 25872772 (+) False LOC110516920
XM_036942389.1 mRNA downstream 46026 26141541 ~ 26155230 (+) False LOC110487402
XM_036942388.1 mRNA downstream 50266 26145781 ~ 26155230 (+) False LOC110487402
XM_036942387.1 mRNA downstream 50306 26145821 ~ 26155230 (+) True LOC110487402
XR_005035734.1 mRNA downstream 158311 26253826 ~ 26255885 (+) True LOC118938455
XR_005035728.1 mRNA downstream 207887 26303402 ~ 26314343 (+) True LOC110487414
TU1321019 other upstream 217718 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 615143 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 625663 25462927 ~ 25463458 (+) True G1157952
TU1320347 other upstream 674140 25413109 ~ 25414981 (+) True LOC110486053
TU1319792 other upstream 983983 25101540 ~ 25105138 (+) True G1157292
TU1321282 other downstream 14981 26110496 ~ 26115864 (+) True G1158563
TU1321331 other downstream 68284 26163799 ~ 26217394 (+) True G1158612
TU1321055 other downstream 1013610 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 1194722 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 1397639 27493154 ~ 27768641 (+) True G1158342

Expression Profile