RNA id: XR_005035734.1



Basic Information


Item Value
RNA id XR_005035734.1
length 953
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118938455
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26253826 ~ 26255885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agcagcagctgactgcccagttcaaggtcagttcaccgtctcacctcatactgtattggaacAGCAGCAGCTGACTTGATCGTTGATGCTAATCATCATGttttgaatctgagagtaaatggatccgaccacaactctaaaAATGAAGGGTTCAACTGGAGTTGTTCTCAGATCCCCTAAGAACCGTAGGGTTCTTggtcaatgaaaaacagccccaaaaggttcttcaaagaacttgtTAGAAGGTGGATTCATCGAGGAACCTCCGTTGTTGCTGGACTTCTTCCGGGAACTTCGCAATTACAACTGAAAACGATGATCTTCTCAGAAATGAATCAAGTCCATGGAATGGATAAAGACAAAAAGACAATTCAAGGACTATCAGAGGTAGAGAGGCGAGGCAGGGATTTCACCGCTCTTCACTCCTTTACTGCACATCGGCGGAAATCCATTTCACCACGAGAGTGAAATCCCGCTGGCCTTTGATGGGGAGAACATCCACGCCCTCGAGGACGTCTCCATGGGACTTGGGGCTCTGCTAGGGCTGGATTTTTTATTTTCCCTTAAATTTCCCCCAAATGTCAGAAAAACACTTATGTTGTTAATTAAGTTACTGTGTTCTGGGGAGAAGAGAAGTTGGGGTGAAGTTACCAGGGCCGGTCATAAAGATGGCAAACTTCCTAACACAACTAAGTGAATATGATATACACACTAAAGCTAAAAAAATTGTATTTAGCATCAAGTCAACAATATTGTTAGTTTACCTATGATTCATTTATAATGTTTTTATTGTAccccattatttattttttaaatgtcatgAAAAGCTCTATACAaagtaaatgtattatttattatggtCTGACATGTTTGCAGAAATGTTGCAATTTTGTAATGTGTTTTGATTGGTCaattgttttgtaaatattaATTCACGTTTGTGGTGCCACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1321370 lncRNA upstream 16321 26237066 ~ 26237505 (+) True G1158650
TU1321360 lncRNA upstream 26501 26221082 ~ 26227325 (+) True G1158640
TU1321281 lncRNA upstream 114688 26128783 ~ 26139138 (+) True G1158562
TU1321254 lncRNA upstream 158311 26089121 ~ 26095515 (+) True LOC110487386
TU1321256 lncRNA upstream 168697 26072261 ~ 26085129 (+) True G1158539
TU1321079 lncRNA downstream 1940 26257825 ~ 26671072 (+) True G1158376
TU1321051 lncRNA downstream 9091 26264976 ~ 26807861 (+) True G1158349
TU1321114 lncRNA downstream 60562 26316447 ~ 26542441 (+) True G1158411
TU1321442 lncRNA downstream 131928 26387813 ~ 26389650 (+) True G1158714
TU1321451 lncRNA downstream 146689 26402574 ~ 26480917 (+) True G1158723
XM_036942389.1 mRNA upstream 98596 26141541 ~ 26155230 (+) False LOC110487402
XM_036942388.1 mRNA upstream 98596 26145781 ~ 26155230 (+) False LOC110487402
XM_036942387.1 mRNA upstream 98596 26145821 ~ 26155230 (+) True LOC110487402
XM_036942403.1 mRNA upstream 158150 26087931 ~ 26095676 (+) False LOC110487386
XM_036942404.1 mRNA upstream 158150 26087931 ~ 26095676 (+) False LOC110487386
XR_005035728.1 mRNA downstream 47517 26303402 ~ 26314343 (+) True LOC110487414
XM_021559316.2 mRNA downstream 117935 26373820 ~ 26379952 (+) True LOC110487384
XR_005035719.1 mRNA downstream 176428 26432313 ~ 26449529 (+) False LOC110485120
XR_005035718.1 mRNA downstream 176493 26432378 ~ 26449529 (+) False LOC110485120
XM_036942391.1 mRNA downstream 208620 26464505 ~ 26472221 (+) True LOC118938436
TU1321331 other upstream 36432 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 137962 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 382423 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 779848 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 790368 25462927 ~ 25463458 (+) True G1157952
TU1321055 other downstream 853240 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 1034352 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 1237269 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 1520234 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 1520687 27776572 ~ 27782350 (+) False LOC110485129

Expression Profile