RNA id: XM_036942391.1


Basic Information

Item Value
RNA id XM_036942391.1
length 2054
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118938436
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26464505 ~ 26472221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaGCAGATTGCGGTCTGCGACTTTAAGGCAATGCTGCTGTTGTGACGTATAttctagtggacggaacgcttctttcAACCGCAGCAACAGTTTGTCcgccacctcggtagcttgctcgACAAAATAGCCGAACCAATAAAGCTCTTTAGACGCTTTAGTGTATATTAGCCACTGTGTTTTAAGCCCATTTCTCCCCTCTAGTTAGTTATccgatttaatttcatatttattgtgttgttgttattagtcagctagcgggctggttaagttagcattagcctagctagctaacatctccgACCATGAGGTCACTTAGCTACTCTCCTGATAAaaaggtgaaagaggaggaggaagagaaggatgttacaatacaaaaacaagtagagggtgaggccgttaccgtgaaagaagagaaagacgtttcagtgaaagaagaggaagacgtgTTCAGagtaaaagaagaggaagacTTGTTCAgagtaaaagaagaggaggatgcagTTGTTGAAGTGAAAGAGGGGGAGATGATTGTCacatcgaaaaaggagggggaagaagaggaggaaacgggatatctgggcccggtttcccaaaggcatcttaaggcatccaatggttctaacgatgaacgttccctgattaacactagagagagtggggactattgtggatcctctggggatcctcaacaacctcatgatgctgaagaggcagagaagagtctctccagatcaaaACACCTCAAGAAACACCTGCAGAGATCCACAGGGAAGAGAACTcacttctgctctgactgtgggaagagattcacctcatcaggcattaaaattcatcagagaacacacacaggagagaaaccttatagctgtggtcaatgtgggaagagttttcctCAATCTGGCTCTCTGacagtacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggcaGAGTTTTGTTCAAGCTAACAATCTGACTCGacacaagagaacacacacaggagagaaaccttatagctgtggtcaatgtgggaggagttttacAACATCTAGCTCTCTGacagtacaccagagaacacacacaggagagaaaccttatagctgtggtcaatgtgggaagagttttggtcaaTCTGGAGAGCATACagtgcaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggagcaGTTTTCCTTCATCTAGCTATCTGacagtacaccagagaacacacacaggagagaaacgttatagctgtgatcaatgtgggaagagatttactTTCTCTGGCACtctgactcaacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaggagttttactacatctagctctctgacagtacaccagagaaaacacacaggagagaaaccttatagctgtggtcaatgtgggaggagttttactacatctagctatctgacagtacaccagagaaaacacacaggagagaaaccttatagctgtggtcaatgtgggaggagttttactacatctagctatctgacagtacaccagagaaaacacacaggagagaaaccttatagctgtggtcaatgtgggaggagttttactacatctggcCATCTGACAGTACACCAGAGAAGACACACAGGAGAAAAATCACATAGCTGTGACCAGAGATAATCTGTTAAAAGATCTCTGATCAAATATtagaaaatacatacatgaaggagttgtttcatgttttcaatgaattaatgtcacaatgtagaatgttttaacattgtagtaggagtattttaatgatgtcacaatgtagaagccTAAACGTTTCCCCCCCTTTATGATTTGATTTCATaatgatatggatattagcctcaCGGGAAAATGGAAGAGTACTATTTATGTGATTTAATAAAAATTGACAAACAaaaaagttcaaatcaaatgtatttatatagggcttcttacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321047 lncRNA upstream 15171 26432495 ~ 26449334 (+) True LOC110485120
TU1321479 lncRNA upstream 35883 26428002 ~ 26428622 (+) True G1158745
TU1321442 lncRNA upstream 74855 26387813 ~ 26389650 (+) True G1158714
TU1321370 lncRNA upstream 227000 26237066 ~ 26237505 (+) True G1158650
TU1321360 lncRNA upstream 237180 26221082 ~ 26227325 (+) True G1158640
TU1321458 lncRNA downstream 31102 26503323 ~ 26514040 (+) True LOC110487396
TU1321462 lncRNA downstream 62494 26534715 ~ 26535361 (+) True LOC118936356
TU1321460 lncRNA downstream 81706 26553927 ~ 26554885 (+) True LOC110487357
TU1321566 lncRNA downstream 97475 26569696 ~ 26570103 (+) True G1158824
TU1321639 lncRNA downstream 194125 26666346 ~ 26666840 (+) True G1158896
XR_005035719.1 mRNA upstream 14976 26432313 ~ 26449529 (+) False LOC110485120
XR_005035718.1 mRNA upstream 14976 26432378 ~ 26449529 (+) False LOC110485120
XM_021559316.2 mRNA upstream 84553 26373820 ~ 26379952 (+) True LOC110487384
XR_005035728.1 mRNA upstream 150162 26303402 ~ 26314343 (+) True LOC110487414
XR_005035734.1 mRNA upstream 208620 26253826 ~ 26255885 (+) True LOC118938455
XM_036942380.1 mRNA downstream 30798 26503019 ~ 26514208 (+) False LOC110487396
XM_036942379.1 mRNA downstream 30799 26503020 ~ 26514208 (+) False LOC110487396
XM_036942411.1 mRNA downstream 57273 26529494 ~ 26535020 (+) False LOC118936356
XM_021559284.2 mRNA downstream 77198 26549419 ~ 26555992 (+) False LOC110487357
XM_036942381.1 mRNA downstream 203018 26675239 ~ 26690594 (+) True LOC110487400
TU1321331 other upstream 247111 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 348641 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 593102 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 990527 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 1001047 25462927 ~ 25463458 (+) True G1157952
TU1321055 other downstream 636904 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 818016 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 1020933 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 1303898 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 1304351 27776572 ~ 27782350 (+) False LOC110485129

Expression Profile