RNA id: TU1321055



Basic Information


Item Value
RNA id TU1321055
length 624
RNA type TUCP
GC content 0.45
exon number 3
gene id LOC110487383
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26977083 ~ 27174368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTTGCTAAGTTAGCTTAGAACTAGGCTATTCGCTAAtgctaacatccccgaccatgagttcactaagctactctcctcctgataaagaagaggtctgctggacggagaaagaaacCCTCGTCAAAGAGGAGGACGAAGAAGAGgctgttacaatacaaaaacaagtagagggtgaggctgttaccgtgaaagaagaagagaaagacgtttcagtgaaagaagaggaAGAAGCTCTGGGGCTGAACATTGTCCTGAAAGAGGAGAATGTGacagtaaaacaagaagtagaggttgaggctattacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaaaaggaagatgttacagtaaaagaagaggagaaagaggatgcatgttttggagtgaaagatgaggagggggagatgactgtCACATTGAAAGATGAAGTCGAAGAGGAGGAGATAGGATATatgattaacaccagagagagacgggactatcatggatcctctggggagcctcaacaacaacatgatgctgacgaggcagagcagagtctctccacatcagaacacctcaagaaacaccagcagagacccGCTAGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1321781 lncRNA upstream 56298 26951028 ~ 27052827 (+) True G1159034
TU1321819 lncRNA upstream 78283 27025741 ~ 27030842 (+) True G1159065
TU1321794 lncRNA upstream 86800 26981101 ~ 27022325 (+) True G1159045
TU1321802 lncRNA upstream 112725 26993058 ~ 26996400 (+) True G1159049
TU1321091 lncRNA upstream 119525 26988858 ~ 26989600 (+) True G1158388
TU1321043 lncRNA downstream 2374 27172168 ~ 27174368 (+) True LOC110487383
TU1321034 lncRNA downstream 88781 27258575 ~ 27630123 (+) True LOC118938440
TU1321943 lncRNA downstream 93345 27263139 ~ 27264833 (+) True G1159181
TU1321972 lncRNA downstream 124789 27294583 ~ 27295249 (+) True G1159206
TU1321996 lncRNA downstream 167821 27337615 ~ 27338168 (+) True G1159229
trnak-uuu-6 mRNA upstream 61626 27047427 ~ 27047499 (+) True trnak-uuu-6
XM_036939730.1 mRNA upstream 129892 26975950 ~ 26979233 (+) True LOC110485124
XM_036939728.1 mRNA upstream 236870 26848690 ~ 26872255 (+) True LOC118938064
XM_036939727.1 mRNA upstream 291590 26813566 ~ 26817535 (+) True LOC118938063
XR_005035715.1 mRNA upstream 356418 26724839 ~ 26752707 (+) False LOC110487360
XM_021559321.2 mRNA downstream 75882 27245676 ~ 27257780 (+) True LOC110487391
XM_021556197.2 mRNA downstream 115638 27285432 ~ 27291404 (+) False LOC110485126
XM_036942402.1 mRNA downstream 218941 27388735 ~ 27400326 (+) True LOC118938439
XM_036942409.1 mRNA downstream 239734 27409528 ~ 27415373 (+) False LOC118938442
XM_021559309.2 mRNA downstream 246157 27415951 ~ 27424543 (+) False LOC110487379
TU1321331 other upstream 891731 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 993261 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 1237722 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 1635147 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 1645667 25462927 ~ 25463458 (+) True G1157952
TU1321965 other downstream 120443 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 323360 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 606325 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 606778 27776572 ~ 27782350 (+) False LOC110485129
TU1322230 other downstream 606778 27776572 ~ 27782350 (+) True LOC110485129

Expression Profile