RNA id: TU1321043


Basic Information

Item Value
RNA id TU1321043
length 1374
lncRNA type sense_over
GC content 0.41
exon number 4
gene id LOC110487383
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26977083 ~ 27174368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTAGATatgttttttcttgttttttagttgttgacagccagtagacacCATGTTTATATTGGTGAAGATGAAGCATTTTAGTTGATATTGATATGAAATGGatgttgttttctgttggtgaTGAGAACCTGCCCAAcaaaaatataggatatatttgttgtcttaagggggaaggtgttacaggctttggtttttccattcatgttttgaggttggactttagctCGTTAGTACTGTGAGGGAATTTTCTGTTAAACCTTACTAATGCTTGTGTAGTAAAATATAATTCTTTAAGCCAAGGCATTGGGCTTGAGATTGGTAAAGAACCTAACTCCTATAACATAGAAAAGTGTGTTGATAGAGGCCTGTTCTGGGTGTGTAGAATGAACCCATGATGTTCGGACACTCAGCCAAGAATATGATAGAAACTGACTGGTTCCTCTTGATCCTCCACAGAGTAAAGGTTATATCCTGCACACCAGTAACAGAGCTATTGTTTTGGAGCCTGTTTTGGGGGAAATATTCTGGTGGAGAAATCAGAATTAACTAAGTAATAAAGTAACATAGATAGTTAAGATGTATTACCTGCAGAATATGCTGATATGAACTATTGACCTCTTGTTATTAGAATGTCTCCTTTCTGACTCTGGTGTTGGCAGCTGCACTTCCCCCCTCAAATGGGCCTCAGTCACTTTGGGTCCAGAGAGGGGAGATGTCAGGCTTATCGATCACATGTCCCTgttgctatgcagaatatcaACATCGATCACATGTCCCTgttgctatGCAGAATATCAGCATCGATCACATGTCCCTGTTGCTAGGCAGAATATGAGCATCGATCACATGTCCCTgttgctatgcagaatatcagcaGATAGTAAGGCAAAGGAGATCTGAAGGAAAGATTGTTTCCATATGTGAACTGTTTTTATTgcaaaccatgtgaagggatggcgtgaGTAATGGGAACCAATCACTTGTCTCCACAGTGTCTGTGCGCCGGTCACTTCCTCCTAGGGGGAGATTGTATTTGGGGCCCAAGGTCTGGCACAGGATGTGTGGGGTTGGTGTTTGGAACCATTGTACGTCATCTCTGAAGTTGCACCTATCCTGAGATACTATATAACCCAGAAGCAAGCCTCCCTGTTATAACAAGTCTTTTAATAAAAGTAAAACCTTGATTGATTATTAATTTAGCCTCTCATTGTTGATTATGGGTAGAATTTCCACCACAGCACGTAGGGCGAACCGATTGGTATCACCTCGTTAGTCAgaatgtgttacacctgtgctggcttgtccgtCTTGTTAGTTGGATGTTGCATCCAATTGTTAATATTGTAATCAATGACATTTCCTTAGGGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321068 lncRNA upstream 811 26977083 ~ 27171357 (+) False LOC110487383
TU1321781 lncRNA upstream 119341 26951028 ~ 27052827 (+) True G1159034
TU1321819 lncRNA upstream 141326 27025741 ~ 27030842 (+) True G1159065
TU1321794 lncRNA upstream 149843 26981101 ~ 27022325 (+) True G1159045
TU1321802 lncRNA upstream 175768 26993058 ~ 26996400 (+) True G1159049
TU1321034 lncRNA downstream 84207 27258575 ~ 27630123 (+) True LOC118938440
TU1321943 lncRNA downstream 88771 27263139 ~ 27264833 (+) True G1159181
TU1321972 lncRNA downstream 120215 27294583 ~ 27295249 (+) True G1159206
TU1321996 lncRNA downstream 163247 27337615 ~ 27338168 (+) True G1159229
TU1321066 lncRNA downstream 235810 27410178 ~ 27412877 (+) True LOC118938442
XM_036942523.1 mRNA upstream 25623 27143496 ~ 27146545 (+) True LOC118938484
XM_021559314.2 mRNA upstream 50047 27108878 ~ 27122121 (+) False LOC110487383
trnak-uuu-6 mRNA upstream 124669 27047427 ~ 27047499 (+) True trnak-uuu-6
XM_036939730.1 mRNA upstream 192935 26975950 ~ 26979233 (+) True LOC110485124
XM_036939728.1 mRNA upstream 299913 26848690 ~ 26872255 (+) True LOC118938064
XM_021559321.2 mRNA downstream 71308 27245676 ~ 27257780 (+) True LOC110487391
XM_021556197.2 mRNA downstream 111064 27285432 ~ 27291404 (+) False LOC110485126
XM_036942402.1 mRNA downstream 214367 27388735 ~ 27400326 (+) True LOC118938439
XM_036942409.1 mRNA downstream 235160 27409528 ~ 27415373 (+) False LOC118938442
XM_021559309.2 mRNA downstream 241583 27415951 ~ 27424543 (+) False LOC110487379
TU1321055 other upstream 2374 27109125 ~ 27169794 (+) False LOC110487383
TU1321331 other upstream 954774 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 1056304 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 1300765 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 1698190 25473122 ~ 25473978 (+) True G1157972
TU1321965 other downstream 115869 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 318786 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 601751 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 602204 27776572 ~ 27782350 (+) False LOC110485129
TU1322230 other downstream 602204 27776572 ~ 27782350 (+) True LOC110485129

Expression Profile