RNA id: XM_036942523.1


Basic Information

Item Value
RNA id XM_036942523.1
length 3050
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC118938484
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 27143496 ~ 27146545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTCCACACATTCCAGTCCAAAGAGAAAGGCACAGACCAAACACTGGAACACTTGCGGAAGAAATACAACACAGTTTTCAGTGATCAGATGGGAACAGTAAAAGGCTTCACAGCAAAACTTGTACTAAGAGATGACGCAACCCCGAAATTCTGCAAAGCCAGATCTGTTCCATACTCCCTGAGACCAAAGGTGGAAGCGGAAATCGATCGCTTGCAGGATACAGGGATCCTGACGAAAGTGGACAGAAGCGAATGGGCCACACCCATAGTTCCTATTGTGAAGAAAGACGGAATGTCTGTTAGAATGTGTGGGGACTTCAAGGTAACTGTGAATTCAATGTTGCATGTGGACCAATACCCCCTACCACGTCTGGATGACATCTTTGCTGCACTAGCTGGTGGGAAACACTTCAGTAAAATCGATCTGAAACAGGCTTACCTGCAGCTACCGGTTGAAGAGAGTTCCAAACAGTACctgacaataaacacacacaaaggtcTATACAGGTATAACCGCCTGGTTTTTGGCATTGCATCAGCCCCAGCCATTTGGCAACGAACTATTGACCAGATTTTGCAAGGAATCCCAGGAACCCAGTGTATCCTGGATGACATGATCATAACAGGACGCACCGACAAAGAGCACCTGGCTAACCTGGAAGAGGTCCTGAAAAGACTGAAAGAGTATGGTCTACAGGCAAACTTAAAGAAGTGTGAGTTCTTCAAAGACAAGATTGTCTTCTGTGGACAGGAGATTGACTGCAATGGATTGcacaaaacacaggacaaaatCGAGGCAGTGGTACAGGCACCACGACCACAAAATATCACAGAAGTAAGATATTTCACGGGACTGATCAATTACTACAGAAGATTCCTCCCAAACCTTTCAGCAGTACTCCAGCCTCTAAATCAGCTCCTGGAAAATAATAGGACATGGCGGTGGACAGAGCAGTGTGAAAATGCATTTCTGGAGGCAAAACGGCTCATAACATCTGAACAGGTCCTGATGCATTACGACCCTGAAATGCCAGTGAAGTTGGCTTGTGATGCGTCCCCTTATGGATTAGGGGCAGTCctttcacacacactgaaagatggGTCAGAGAGGCCAGTTGCATTTGTGTCACGAACATTGAATGATGCAGAGAAAAACTACTCACAAATCGACAAAGAAGCACTGGCACTAGTGTGGGGCGTCAAGAAATTCCACGCATACCTATATGGCAAGCGTTTCACACTGGTTACAGATCACCAGCCGTTGCTTTCCATTTTCAGTCCAAAGAAAGGCATTCCGGCAATGACAGCAGCCAGGTTACAGCGATATGCCCTGTTCCTTGCCAGTCATATGTATGACATTGAGTTTAAGTCGTCATCCCTCCACACAAATGCAGATGGATTATCCAGACTGCCGTGtacaagagaaagacaaaggagggtGGATGCAGTGGACATGTTCCATACCTCTCAGCTCGAGGCCCTACCAGTCACAAGCACAGTTATCAAACAGGAGACAAGGAAAGATGTGACCTTGTCAAAAGTGTACACTTACACCATGTCAGGATGGCCAGCTACTGGCAGAAAGGAGCTGACTCCGTATTTCCAGCGGAGAAACGAAATTACAACGTACCAAGGATGTTTGATGTGGGGAATGAGAGTCATGATACCCCAGAAATGCCAACATCTAGTCTTGCAGCAACTACATGAAGGTCATGTTGGAATTGTCAAAATGAAGCTGCTCGCAAGGAGCCACTTCTGGTGGCCAGGTCTGGACCAACAGATAGAAAATATGGCAAAGAACTGTAGTGGATGTTTGGAAACCATCCACATGCCTGCTCCTGTCCCAGTCCACCCATGGGAATGGCCCGCAGAGCCATGGCAGAGAATTCATGTGGACTACGCTGGTCCTTTTGAAAAGCACATGTTTCTGGTTATAGTTGATGCCCATTCCAAATGGCCAGAGGTGTTTTGCACTGACTCCTCCACCTCAGCTCAGACGATAGAGTGTCTCAGAACAACGTTTGCACGCTTCGGTTTGCCACTGCAGCTGGTAAGTGACAACGCGCAAGTTTTTGTAAGTGACGAGTTTACAAGATTCATGTCAGTAAATGGAATCAAACACTCAACCTCAGCTCCGTACCACCCTGCCACCAATGGGCTGGCAGAACGCTTTGTGCAAACCCTAAAGCAAGGACTCCGTGCAGCAAAACGAGACGAAGGGACTTTGCAAACAAAACTGGCCAAGTTCCTGGCCTCCTACCGAAACACCCCACATGCCACGACAAATGAAAGCCCAGCCGCACTGATGTTCGGGAGGCCTCTCCGCACACAGCTGGACATCATGAAGCCAAACAGGCGTAATGAAGTGCTGAACAAACAAGCCAAGATGCTCTCCGGTGGCCGGGAGCGCCATCTCCAAACAGGACAGGAAGTGATGGTGCGAGACTACAGAAGAGGAGGGAAATGGACAAGAGGGACCGTACACACACAAACGGGATCCAGAACTTACCAGGTTCAAGTAAGCCCAGACATAATGTGGCGGCGTCACATTAACCAAATGCATTCCAGGGATAACAGCACAACAATCGAGAGAGAACAGGCACAGAGAGCTCCTGAGGGTGACACACAGGGAACTGTAGAGGACGGTGGGGCAGTAGAGAGACCCCAGGCTGAAAGAAGGGAATGTGTTGATGAAGGTGCTGCTATAGCAGACGCTATAATGGAACAAGCACACACTGAGGATGTTCAGGAGTCTCCAGACAATCCGAGGCGCTACCCAGAACGAAGGCACCGTCCACCAGACAGACTAGActtataaacaaacaaacaaaaacgaaCTGTTCAAGTTCAAATTAAAAGATGCAAAATAACTACAACAAGTTCTGGGAAATGTTTCAGTTGTGGTTTGGTAAAAGTAACTCTGATTGTATAAGAGAAGGaatgttatgttctgttaattactgatgtcccctttaaggatggagcacccttggtcatgcgcagtgttgttctatgttattctggtactaactagtttgagtaaatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321781 lncRNA upstream 90669 26951028 ~ 27052827 (+) True G1159034
TU1321819 lncRNA upstream 112654 27025741 ~ 27030842 (+) True G1159065
TU1321794 lncRNA upstream 121171 26981101 ~ 27022325 (+) True G1159045
TU1321802 lncRNA upstream 147096 26993058 ~ 26996400 (+) True G1159049
TU1321091 lncRNA upstream 153896 26988858 ~ 26989600 (+) True G1158388
TU1321043 lncRNA downstream 25623 27172168 ~ 27174368 (+) True LOC110487383
TU1321034 lncRNA downstream 112030 27258575 ~ 27630123 (+) True LOC118938440
TU1321943 lncRNA downstream 116594 27263139 ~ 27264833 (+) True G1159181
TU1321972 lncRNA downstream 148038 27294583 ~ 27295249 (+) True G1159206
TU1321996 lncRNA downstream 191070 27337615 ~ 27338168 (+) True G1159229
XM_021559314.2 mRNA upstream 21375 27108878 ~ 27122121 (+) False LOC110487383
trnak-uuu-6 mRNA upstream 95997 27047427 ~ 27047499 (+) True trnak-uuu-6
XM_036939730.1 mRNA upstream 164263 26975950 ~ 26979233 (+) True LOC110485124
XM_036939728.1 mRNA upstream 271241 26848690 ~ 26872255 (+) True LOC118938064
XM_036939727.1 mRNA upstream 325961 26813566 ~ 26817535 (+) True LOC118938063
XM_036942372.1 mRNA downstream 8327 27154872 ~ 27172664 (+) False LOC110487383
XM_021559321.2 mRNA downstream 99131 27245676 ~ 27257780 (+) True LOC110487391
XM_021556197.2 mRNA downstream 138887 27285432 ~ 27291404 (+) False LOC110485126
XM_036942402.1 mRNA downstream 242190 27388735 ~ 27400326 (+) True LOC118938439
XM_036942409.1 mRNA downstream 262983 27409528 ~ 27415373 (+) False LOC118938442
TU1321331 other upstream 926102 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 1027632 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 1272093 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 1669518 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 1680038 25462927 ~ 25463458 (+) True G1157952
TU1321965 other downstream 143692 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 346609 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 629574 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 630027 27776572 ~ 27782350 (+) False LOC110485129
TU1322230 other downstream 630027 27776572 ~ 27782350 (+) True LOC110485129

Expression Profile