RNA id: TCONS_00004039



Basic Information


Item Value
RNA id TCONS_00004039
length 694
RNA type processed_transcript
GC content 0.37
exon number 6
gene id XLOC_002085
representative False

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21670831 ~ 21674458 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


atttgaaattcacctgtcgtctttcatccagcgaattcatcctcgcacaacactgagatgaaggcgaagtcaccatgaaaagttaaacctttaccgttaaggtgtacctgagctacagtaattgatgttgaaaaactgatgctaccaatcactcctcacttgattattcaaggtaatgttgatgtcttcctcatttttattagattttgaaatgtcaagttgttcacagatttgttgtgaggagtttcatgtaaaacctctttttcttcttccagcagttcctaagataaaaaaaaaaatctggtgttaaaacagcagtctttgtttattagcaattttactgggcgtaTGGAActggaaactgtaagtttagttcaatatgttattttatgctattcatttttgtcttaacatggattgcatgttgaagctatcattttatagtgggaaaatgtaaaagagaatcactgaatacaatggcataatgattctgcttgttcaaagaagcccaaattgtgatggacctggaatgcgacaccagttactcttaagacaagaaccgaataaagcacagtggagggatttgcagccaaactaactggagggaaggaacctttagtgtgggtgaacatactacctggatgtccaacaaaggctgcacaagagctcatttgattgcacatattctgtcctg

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158565

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005879 lncRNA upstream 127295 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004023 lncRNA upstream 218722 21444665 ~ 21452135 (+) False XLOC_002078
TCONS_00005877 lncRNA upstream 462657 21179484 ~ 21208200 (+) False XLOC_002074
TCONS_00005878 lncRNA upstream 481721 21179547 ~ 21189136 (+) True XLOC_002074
TCONS_00005876 lncRNA upstream 564147 21103921 ~ 21106710 (+) True XLOC_002073
TCONS_00005705 lncRNA downstream 72241 21745262 ~ 21745505 (+) True XLOC_002088
TCONS_00004074 lncRNA downstream 194286 21867307 ~ 21868226 (+) False XLOC_002089
TCONS_00004076 lncRNA downstream 194312 21867333 ~ 21868723 (+) True XLOC_002089
TCONS_00005706 lncRNA downstream 233131 21906152 ~ 21906377 (+) True XLOC_002091
TCONS_00005880 lncRNA downstream 241614 21914635 ~ 21944085 (+) True XLOC_002092
TCONS_00004033 mRNA upstream 21685 21588002 ~ 21649172 (+) True XLOC_002082
TCONS_00004029 mRNA upstream 22090 21563986 ~ 21648767 (+) False XLOC_002082
TCONS_00004044 mRNA downstream 4037 21677058 ~ 21699175 (+) False XLOC_002083
TCONS_00004045 mRNA downstream 4037 21677058 ~ 21818583 (+) False XLOC_002083
TCONS_00004048 mRNA downstream 28547 21701568 ~ 21818515 (+) False XLOC_002083
TCONS_00004050 mRNA downstream 45447 21718468 ~ 21818583 (+) False XLOC_002083
TCONS_00004051 mRNA downstream 49871 21722892 ~ 21725312 (+) True XLOC_002086
TCONS_00004021 other upstream 227445 21440978 ~ 21443412 (+) False XLOC_002078
TCONS_00004018 other upstream 227745 21434790 ~ 21443112 (+) False XLOC_002078
TCONS_00004019 other upstream 233547 21434791 ~ 21437310 (+) False XLOC_002078
TCONS_00004020 other upstream 234881 21434794 ~ 21435976 (+) False XLOC_002078
TCONS_00004015 other upstream 268691 21399715 ~ 21402166 (+) True XLOC_002077
TCONS_00004046 other downstream 28530 21701551 ~ 21818605 (+) False XLOC_002083
TCONS_00004047 other downstream 28530 21701551 ~ 21820057 (+) False XLOC_002083
TCONS_00004049 other downstream 35442 21708463 ~ 21820057 (+) False XLOC_002083
TCONS_00004062 other downstream 113635 21786656 ~ 21818605 (+) False XLOC_002083
TCONS_00004071 other downstream 131751 21804772 ~ 21812578 (+) False XLOC_002083

Expression Profile


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