RNA id: XM_036942385.1


Basic Information

Item Value
RNA id XM_036942385.1
length 2973
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110487368
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 27439224 ~ 27538219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGTATAATCCAGTGGACGGTTCTTCAGAAACAGCTCGTCAACAACCTCGGTAGCTTGATAGCCAACATAGCCGAAAGATTCAAGCTATTTATACGCTTTCGGTGTATATTAGCTACTGTGTTTTAGACACAGTTCTGTCGTATCTACTTGTTAACCTATTTAATTTAATATTAACGTTACATTATTTTGTATTAGTCAGCTATAGTAGctggctggttaagttagcattagcaTAGTCGCTAAtgatatctagctagctaacatccccgaaCATGAGCTCCCTAAACATCTCCCCTCCTgttaaagaagaggaggtctgctggacggagaaagaagctctggggctgaacattgttgtgaaagaggagaaggaagaggaggatgtcacagtaaaacaagaagtagaaggtgaggctgttactgtgaaaaaagaagagaaagacgttacagtgaaagaagaggaagagaaagaggaggatgtagTTTTTGGAGTGAAGATGGAAggggagattactgtcacattgaaagatgaagaggtggagataggagatctgattaacaccagagagagacgggactACCGTGGGTCATCTGGGaagcctcaacaacctcatgatgctgacgaggcagagaagagtctctacAGATCAGAACACGTCAAGAAACACCAGCGGAGATCCACAGGGAAGGGAACTccctgctgctctgactgtgggaagagattcacctcatcaggcattaaaattcatcagagaatcCACACAGCAGAGAAACCTTacggctgtgatcaatgtgggaagagttttgttcaatACAGCCATCTGaagatacaccagagaacacacaaaggagagaaatcttatagctgtactcaatgtggtaAGAGTTTTAGTCATTCAACCAGCCTGAtaccacaccagagaacacacacaggagataatccttatagctgtgatcaatgtgggaagagttttactcagctaaGCATCCTGATATCACACCATagaacacacacaggtgagaaaccttatagctgtgatgaatgtgggaagagttttactacatctagaaatctgactctacaccagagcATACACACAAAAGATAAATCTtttagctgtactcaatgtgggaagagttttctTCAATATAGCCATCTGaagatacaccagagaacacacacaggagagaaaccttttagctgtactgaatgtgggaagagttttagtcATTCAACcagcctgatatcacaccagagaacacacacaggagaaaaaccttatagctgtgatcaatgtgagaAGAGATTTACTCAGCTAAGCatcctgatatcacaccagagaacacacacaggcgaGAGACCTTATAGCTGttctcaatgtgggaagagttttactcagctaaGCAACCTGatttcacaccagagaacacacacaggagagaaaccgtttAGCTGTGATGAATGTGGGAAGATTTTTACTACATATAGAAATCTGACTcgacaccagagaatacacacaggagagaaaccttttagctgtactcattgtgggaagagttttacacAGCAAAGcaacctgatatcacaccagagaacacacacaggagagaaaccctatagctgtgatcaatgtgggaagagttttactcagctaagcaacctgatatcacaccagagaacacacacaggagagaaaccctatagctgtggtcaatgtgggaagagttttgctacATCTGGGCAGctgactatacaccagagaacacacacaggagaaacctcTTAGCTTTGACCAGAGATAATCTGATAAAAGATCTTAGATCAAATATTAGAAAGTACATACAGgaaggagttgtttcatgatatcaatgaattactgtcaatgttttaacattgtactAGGAGTATTTTAATcatgtcacaatgtagaagccTAAATGTTTGCCCCCTTATCAATTAATATCAacatgatatggatattagcgTTCGGGGgaaaaatccaggctctgaatttaaagttgtgttgtgttgagttgtgttacACTTACCACGTTGGTGACCCACTGCAGTTTATAAggagcttgtttaaaaaatacaaataacatgATGTTTGTGTATATAGCACATTTTATGTTTAGGTTTTCAATTTATCCCAAACTGTTTCTGCgtattggttattgatttggacacgttAACACTGTTTTGACATCAGGCTTTCCCACCGAGCAAAATGTCATTGAAAAGACATTCAAAAGAAGACTATGCCCGACGTCCAATATACGTTCggttgaaaatatgtattttgggGTAATTTTTTTGACTTGAAAATAACTTAATTTCAACTTACttgcaggtatcctagtggttagagcgttgggccatcattgtaagccagaatttgttcttaactgacttatttacaatgatggcctaccagggagcagtgggttaactgccctgtttaggtgcagaatgacagatttttaccatgtcagctcgggatccagtccagcaacctttcggttcctgttaaatgaaggttaaaataaacaaataaaaacacagtATAACAAATTGGTCTATAATCAATTTTATTAACCATCTTtcatcactccagtatttcttGACAACATTCAATTGCTAATTGTCtttattccactactgaagacacgTCTCAAATCACCTCAAACATTCAGCCTGACAAAAGATATGTTTTATTATTCAATGCCTGACAATTAAGTGAATTATTGCCAATACATATTAACAAAGGGGTGTACATTTGATCACAATTTATTGTGACTGCATGTTTTTCTGTATTGGAGATGGGTTTTGTTTGGACTCGTTCCAAGTGGAcaagaagctagtgagttttaggaagatgagagttctagaagctagtgagttttagaagctagtgagtttttaGGAAGatgagttctagaagctagtgagttttaggaagatgagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321066 lncRNA upstream 112831 27410178 ~ 27412877 (+) True LOC118938442
TU1321996 lncRNA upstream 187540 27337615 ~ 27338168 (+) True G1159229
TU1321972 lncRNA upstream 230459 27294583 ~ 27295249 (+) True G1159206
TU1321943 lncRNA upstream 260875 27263139 ~ 27264833 (+) True G1159181
TU1321043 lncRNA upstream 351340 27172168 ~ 27174368 (+) True LOC110487383
TU1322115 lncRNA downstream 2083 27540029 ~ 27545029 (+) True LOC118938450
TU1322136 lncRNA downstream 35498 27573444 ~ 27574687 (+) True G1159353
TU1321057 lncRNA downstream 68402 27606348 ~ 27607311 (+) True G1158355
TU1322231 lncRNA downstream 240562 27778508 ~ 27784144 (+) True G1159434
TU1322236 lncRNA downstream 243110 27781056 ~ 27786666 (+) True G1159437
XM_036942396.1 mRNA upstream 27287 27493088 ~ 27498421 (+) False LOC110487369
XM_021559295.2 mRNA upstream 27287 27493096 ~ 27498421 (+) True LOC110487369
XM_021559297.2 mRNA upstream 54074 27464627 ~ 27471634 (+) True LOC110487372
XM_021559294.2 mRNA upstream 73487 27439224 ~ 27452221 (+) False LOC110487368
XM_021559309.2 mRNA upstream 101165 27415951 ~ 27424543 (+) False LOC110487379
XR_005035725.1 mRNA downstream 1926 27539872 ~ 27544693 (+) False LOC118938450
XR_005035726.1 mRNA downstream 2770 27540716 ~ 27544693 (+) False LOC118938450
XM_036942405.1 mRNA downstream 86075 27624021 ~ 27630770 (+) False LOC118938440
XR_005035731.1 mRNA downstream 184234 27722180 ~ 27724417 (+) True LOC118938453
XM_036939731.1 mRNA downstream 230208 27768154 ~ 27788573 (+) False LOC110485129
TU1321965 other upstream 234490 27290237 ~ 27291218 (+) True LOC110485126
TU1321055 other upstream 355914 27109125 ~ 27169794 (+) False LOC110487383
TU1321331 other upstream 1308314 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 1409844 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 1654305 25856632 ~ 25871403 (+) True LOC110516920
TU1322228 other downstream 238173 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 238626 27776572 ~ 27782350 (+) False LOC110485129
TU1322230 other downstream 238626 27776572 ~ 27782350 (+) True LOC110485129
TU1322233 other downstream 242276 27780222 ~ 27786165 (+) False G1159435
TU1322234 other downstream 242276 27780222 ~ 27786165 (+) True G1159435

Expression Profile