RNA id: LOC110487371


Basic Information

Item Value
RNA id LOC110487371
length 2634
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC110487371
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28074969 ~ 28077602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGCTACGCTGTTGGCATCACCTTTTACAGtggatttctgctgttgtggCCCTGtaaccatctgtctgactttgttgttcacacaggagagagacgtgactattgtggatcctctggggagcctcaacaacctcatgatgctgacaaggcagagaagagtctctccacattagaacacctcaagaaacaccagcagagatCCAAAGGGAAGAgaactcactgctgctctgattgtgggaagagtttcacctCCTCAGGCATTACAATTCAtcagagaatccacacaggagagaaaccttttagctgtactcaatgtgggaagagttttactcagtcaacCAGCCTGATGTCACAccagagaatccacacaggagagaaaccttttagctgtactcaatgtgggaagagttttactcagtcaaccatcctgatatcacaccagagaacacacacaggtgtAAAACCCTATAGCTGTGCTCAttgtgggaagagattcacctcCTCAAAAGTTGTTAATGTACATCAAAAAATccatacaggagagaaaccttttagctgctctgactgtggaaagagttttctACTCTCAGGACAATTaaaatcacaccagagaacacacacaggagagaaaacctgtagctgtgatgaatgtgggaagagttacactacatttaacaatctgatggtacaccagagaacacacacaggagagaaaccatattgctgtggtcaatgtgggaagagtttcactcAGCCACATaccctgatatcacaccagagaacacacacaggtgagaaaccttattgctgtggtcaatgtgggaagagttttactcagccaCATACCCTgaaatcacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagcaTTTTACTCAGTCAAGCCACTTGATagcacaccagagaacacacacaggagagaaacctcatagctgtgctcaatgtgggaagagttttactacatcttgCCAGCTAACTactcaccagagaacacacacaggaagtaatccttatagctgtactcaatgtgggaagagttttactcagtcaagccacctgatatcacaccagagaacacatacaggagagaaaccttatgaCTGTGATAAATGTgacaagagatactctgataaaagatatctgattaaacatcagaaaatacatgcaTGAAGGAGTTTTTTCATTATATCAAacattgtagaaggagtattTGTTTGTTGATTGTCTCAAGGTTGGGCAGTCAAACAGTTTTGTGTTTTGCTTTTAGCCAGTGCATCACTATTTATTTTGACTGCAAGTTTTTCCGTATTGGAGATGAGTTTTGTTTGGGCTCGTTCCAAGTGGACGCTATTGAGTTTTAGGAAAActagagttctagaagctagtgagttttaggaagatgagagttctagaagctagtgagttttaggaagatgagagttctagaagctagtggagTTTTTTTACTACATTCGTTTTAGGATTCTATAGAAAGAAAAAGGTGAGAAATAACACTattgtatattattatttagaaataaacttttttttcttgtttttaattgttgacagccagtagacacCATCTTAATATTGTAGAAAGTGAAGCATTGTAGTTGATTATAAtgtgaaatggaagttgttttctgttggtggtgagcaatcttgtccaacaaaaatataggatatatttCTTGTTGTCTTAAAGGGGGAAGGTGTTACTGGCTTTAGTTTTTcttttatgttttgaggttggactttagcacgtCTAGCTCGTAGGgcgcactgattggtgtcacctcgttagtcagtatgtgttacaccagTTCTTTTGTttgcccagtgctccagttgtcttgatagatgtggagagtcaacacctttagttgatccacctttttggtttgcttcctgtctttaagtttgtgGGTTATTATTTTGTTCTCCTATTCTTGGGCAGATTTAGAgggtctcatggtgggtgtcttttatgttccagttgttgttactagtcaactttcagAGGACACTGAGAGcaaaaattgcaagattatgttataatacttttattgcatcaaatggttgttttatgcaacagaatagagggttcttagaactattgtgtctgtgtgttctactgaggatgggcctctaggagaaaacactgacaggagatttacagTGTCTTTTGGGTGATGATATCTAAAGAGActgcattccagagcatgagatAATGTTTTTTTCTAtatggtaccagggagagatgacctcagggccagaccctggtctctacacaaagagtactgtttttacagcagatactgtctgctgtgaattataagtacctttcatacaaatcttaatcTTGTGACCCGTTCTATACATCTGTTGTTCGTCATGTAGAttgaaaggggtgtatcttggctgtAAAAGACCTTTGTACTTATGTCTCGtggctctcaacgaatcatctgggggtgattcgtcgaccagccatcattatcgtaGAGCACTCAATTGATTAACTTTTATATGTGTACGTTGTATTGCCTGCTTCCTTATtaagtgaataaagatttagtttaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1322354 lncRNA upstream 17698 28046027 ~ 28057271 (+) True G1159548
TU1322269 lncRNA upstream 154979 27846124 ~ 27919990 (+) True G1159469
TU1321078 lncRNA upstream 222175 27851634 ~ 27852794 (+) True G1158375
TU1321074 lncRNA upstream 259984 27814382 ~ 27814985 (+) True G1158371
TU1321053 lncRNA upstream 263935 27810093 ~ 27811034 (+) True G1158351
TU1322484 lncRNA downstream 120633 28198235 ~ 28198615 (+) True G1159667
TU1322470 lncRNA downstream 125083 28202685 ~ 28203249 (+) True G1159656
TU1322506 lncRNA downstream 141144 28218746 ~ 28238953 (+) False G1159675
TU1322498 lncRNA downstream 145417 28223019 ~ 28267690 (+) False G1159675
TU1322517 lncRNA downstream 155055 28232657 ~ 28262037 (+) True G1159679
XR_005035510.1 mRNA upstream 10301 28061766 ~ 28064668 (+) True LOC118938252
XM_021559329.2 mRNA upstream 39888 28024977 ~ 28035081 (+) True LOC110487397
XM_036940699.1 mRNA upstream 124558 27944456 ~ 27950411 (+) True LOC118938251
XM_036939732.1 mRNA upstream 131193 27915251 ~ 27943776 (+) True LOC110485128
XM_021559303.2 mRNA upstream 159213 27907802 ~ 27915756 (+) True LOC110487376
XM_021559289.2 mRNA downstream 103182 28180784 ~ 28201594 (+) True LOC110487363
XR_005035513.1 mRNA downstream 259078 28336680 ~ 28337325 (+) True LOC118938258
XM_021593186.2 mRNA downstream 260899 28338501 ~ 28348536 (+) False LOC110513252
LOC110487355 mRNA downstream 394731 28472333 ~ 28500669 (+) False LOC110487355
XM_021559308.2 mRNA downstream 518363 28595965 ~ 28603570 (+) True LOC110487378
TU1321052 other upstream 209262 27863508 ~ 27865707 (+) True LOC118938246
TU1322233 other upstream 288804 27780222 ~ 27786165 (+) False G1159435
TU1322234 other upstream 288804 27780222 ~ 27786165 (+) True G1159435
TU1322229 other upstream 292619 27776572 ~ 27782350 (+) False LOC110485129
TU1322442 other downstream 42063 28119665 ~ 28125638 (+) True G1159631
TU1322524 other downstream 174928 28252530 ~ 28257974 (+) True G1159684
TU1322364 other downstream 261383 28338985 ~ 28698821 (+) True LOC110513252
TU1322370 other downstream 395074 28472676 ~ 28499206 (+) True LOC110487355
TU1322806 other downstream 741132 28818734 ~ 28819448 (+) True G1159924

Expression Profile