RNA id: XM_021593186.2


Basic Information

Item Value
RNA id XM_021593186.2
length 2437
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110513252
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28338501 ~ 28698821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactgcgttacccactccaatCAGCAGATGGCTGTGTGGGAATTTATGGTTATGCGGCTAGTGTGACGtctaatctagtggacggaaatCTTCTTTCAACAGCAGCAACAATAGTTAGTCAGACACCTCAGTAGCTTGCAAGACAAAATAGCCGAACCAATATATCGCTTTAGTGTATATTAGCCACTGTGTTTTAAACCCACTTCTGTCGTCTTGGTTAGTTTTccgatttaatttcatatttacggTGTTGTAGTTATTAGTCAGCTAGCGGTctggttaagttagcattagcctagctaacatccccgaccatgcGGTCACTAAGCTACTCTTCTTCTAATGAAGATGAGgatatcacagtaaaacaagaagtagagggtgaggccgttactgtgaaagaagaggaagacatgttcagagtgaaagaggaggaggatgttacagtaaaaggaGAGGATGAAGCAGTttgtggagtgaaagaggaggaggagatgactgTTACATCcaaaaaggaggaggaagaagaggaggaaactggatatctgggcccggtttcccaaacgcatcttaaggcatccaatggttctaacgatgaaTTAAGCCATAAGATGGTTTTGAGAAACCGTTccctgattaacactagagagagaactGTCTACCATGGGTCCTCTtgggagcctcaacaacctcatgatgctgacaaggcagagaagagtctctctagatcagaactcctcaagaaacaccagcagacACCCACGGGAAAGAAATCTcattgctgctctgactgtgggaaaagaTTCACCTCATCAGCAGGcattaaaattcatcagagaatcCACACTTTAGAGAAACCATAttgctgtgatcaatgtgggaagaggttTACTCAGCTATGCAACCtaatatcacaccagagaatacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttactcagctaTGCACACtaatatcacaccagagaatacacacaggagagaaaccatacaGCTGTGaggaatgtgggaagagttttgcaaGGTCGAGCAATCTGATtcttcaccagagaacacacacaggagagaaaccttatatctgtgatcaatgtgggaagagttttactcagctaagcagcctgatatcacaccagagaaaacacacaggagagaaaccatatagctgtgatgaatgtgggaagagttttgcaaGGTCGAGCAATCTGACtcttcaccagagaacacacacaggagagaacccCTATAgttgtactcaatgtgggaagtttttttttacatctagCCATCTGAAGATACACCAGAgaagacacacaggagagaaaccttatagctgtactcaatgtgggaagtgTTTTGTTCAATCTAGCCATCTGAagaaacaccagagaacacacacaggagagaaaccttatagctgtactcaatgtgggaagagttttgttcaatCTGGGGAACTGaagatacaccagagaacacacacaggagagaagccctaTTGCTGttctcaatgtgggaagagttttgttcaatCTAGCCATCTGAagaaacaccagagaacacacacaggagaaaaaccctatagctgtgatcaatgtgggaagcaTTTTACTCAGTCAAGCcacctgatatcacaccagagaacacacacaggagagaaacctcatagctgtactcaatgtgggaaaagttttactcagtcaagccacctgatatcacaccagagaacacatacaggagataaatcttatagctgtgataTATAGATATCTgattaaacatcagaaaatacatgcaTGAAGGAGTTTTTTCATGATATCAAacattgtagaaggagtattTGGGTGCTGATTGTCTCAAGGTTGGGCAGTCAAAACGTTTTGTGTTTTGCTTTTAGCCAGTGCATCACAATTTATTTTGACTAAGTTTTTCCCGTATTGGAGATGAGTTTTGTTTGGGCTCTTTCCAAGGGGACGAGAGTTCTAGAGGCAAGTGGAGTTTTAGGAAGACatgagttctagaagctagtgagttttaagGATTCTatagaaagaaaaagaaaagatacgattgtatattattatttagaaataaatgtttttttattgtttttaattgttgacagccagtagatACCATGTTTATATTGTAGACGGTGAAGTATTGTAGTAGATTATGTGAAATGGAAGTTATTTTCTGTTGGTGGTGCGCAAACTTTTCCAACAACAAGATAGGATATATTTGTTGTTTTTAGGGGGAAAGTGTTACAGGCTTtcgtttttccatttatgttttgaggttggactttagcacataggaaagggggatacctagtctgtacaactgaatgcattcaacggAAATGTGTCTTCAgtgcactgattggtgtcacttCGTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1322541 lncRNA upstream 701 28337490 ~ 28337800 (+) True G1159699
TU1322531 lncRNA upstream 16299 28272713 ~ 28322202 (+) True G1159689
TU1322529 lncRNA upstream 68551 28267793 ~ 28269950 (+) True G1159688
TU1322507 lncRNA upstream 70811 28266738 ~ 28267690 (+) True G1159675
TU1322517 lncRNA upstream 76464 28232657 ~ 28262037 (+) True G1159679
TU1322361 lncRNA downstream 108 28348644 ~ 28353676 (+) True G1159553
TU1322559 lncRNA downstream 63030 28411566 ~ 28432077 (+) False G1159716
TU1322563 lncRNA downstream 64005 28412541 ~ 28438062 (+) True G1159719
TU1322560 lncRNA downstream 67252 28415788 ~ 28422501 (+) True G1159716
TU1322562 lncRNA downstream 90041 28438577 ~ 28446465 (+) True G1159718
XR_005035513.1 mRNA upstream 1176 28336680 ~ 28337325 (+) True LOC118938258
XM_021559289.2 mRNA upstream 136907 28180784 ~ 28201594 (+) True LOC110487363
LOC110487371 mRNA upstream 260899 28074969 ~ 28077602 (+) True LOC110487371
XR_005035510.1 mRNA upstream 273833 28061766 ~ 28064668 (+) True LOC118938252
XM_021559329.2 mRNA upstream 303420 28024977 ~ 28035081 (+) True LOC110487397
LOC110487355 mRNA downstream 123797 28472333 ~ 28500669 (+) False LOC110487355
XM_021559308.2 mRNA downstream 247429 28595965 ~ 28603570 (+) True LOC110487378
XM_036940702.1 mRNA downstream 256053 28604589 ~ 28608693 (+) True LOC118938254
XM_036940706.1 mRNA downstream 359159 28707695 ~ 28713789 (+) False LOC110487366
XM_036940703.1 mRNA downstream 368282 28716818 ~ 28721736 (+) True LOC118938259
TU1322524 other upstream 80527 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 212863 28119665 ~ 28125638 (+) True G1159631
TU1321052 other upstream 472794 27863508 ~ 27865707 (+) True LOC118938246
TU1322233 other upstream 552336 27780222 ~ 27786165 (+) False G1159435
TU1322370 other downstream 124140 28472676 ~ 28499206 (+) True LOC110487355
TU1322806 other downstream 470198 28818734 ~ 28819448 (+) True G1159924
TU1325076 other downstream 950222 29298758 ~ 29299656 (+) True G1161908
TU1325047 other downstream 1015516 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325585 other downstream 1145826 29494362 ~ 29494902 (+) True G1162364

Expression Profile