RNA id: XM_036940702.1


Basic Information

Item Value
RNA id XM_036940702.1
length 2305
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC118938254
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28604589 ~ 28608693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagttttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttgtgTATCAATAACTAGGTGCTTATTTTGATATCTAGTTATGACTGAATCAGAAATACAGATGTGGAGTAGATGTAGAGTTTGTTTTAAATTCTCATAAAAATCTGACCTAATCAAACAACACTTGTTGCTCTTTGTACGTGTTGATATAATATTCATATTTAATGGAGTGGAAAAAAACATTTCCCTAAACTGCTTAATAATATTGTAATTCAATGAAGGAAGAAAAAAGTTTTCCCTCCAGACAGCAGATGGCAATATGTGTCTTTCAGGCGATGTTTCtagtgtgacgtataatctagtggacggaacgcttcttcAACAACTGCAGCCACCTCGGTAGCTCGCTAGCCAACAGTCGGAACGTTCAAGATCTTTTGACAATTTCGTGGTTTAATTGCCACTATGATTTAAACATACTCATGTGGAAACAACTAGATACCCCATTTAATTTAATATTTACGTTGTAAGTCAACTAGCTGGCTAATGCTAACTAGCCATTATCCCCGAACATGAGTTCACCAAGCTACTCTCCTCCTGATAAAGAAGAGgtggtctgctggacggagaaagaagctctcgtGAAAGAGGAGgcggaagaggaggctgttacaatacacaaacaagtagagggtgagggTGTTAaggtgaaagaagagaaagaagagaaagacgcgttcagagtgaaagaggatgaggatgttactgtgaaagaagaggaggaagatgcaGTTTTTGGAGTGGAGGATGAAGTGAAAGAAGATGAAGACGTTTTTGGAATGAAGGATGAAGAgggggagattactgtcacattagaggaggacgaagaagagaagactggagaacttattaacaccagtaaatacaGAGAGAGATGTGaatatcgtggatcctctggggagcctcaacaacatcatgatgctgacgaggcagagaagagtctctccagatcaggacacctcaagaaacaccagcagagacccaCAGGAAAGAAAccacactgctgctctgactgtgggaaacgTTGCAAATCTTCATCAGAACTTAAAAATCACCAGcgagtacacacaggagagaaatcttatagctgtgatcaatgtgggaagattTTTACTATATCTAGCCATCTGACtagacaccagagaacacacacaggagagaaatctcatagctgtgatcaatgtgggaagagttgtACTACATCTAGCCATCTGACTAGACACCAGcgagtacacacaggagagaaaccttatagctgtagtcagtgtggaaagagttttactcagctaaACAGCCTGAAagaacaccagagaacacacacaggagagaaatctcatagctgtgatcaatgtgggaagagatactctgataaaagatctctgatcaaACATCAAAACATACATGAAGGAGTTGAATTTGAAAAATCATATcaaataatgtcacaatgtagaatgttttaacattgtagtaggagtattttaatgatgtcacaatgtagaacccGAAATGTTTGTCCTCTGTTCTATTGGCTTCAACATAATATGGATATTAGCCCCAGGTgaaaaatccaggctctgaattgaaagagTACTATTTATGTTATTTAACAAAAAGTGACAAACAAAAAAAGAGTTGTGTTAAACGTACCAcgttggtgacccacttgaatcaaaatgcaacacttcaaaatgtagctagctgttttctacaaattgtcctctaaccagggatgtacacattattccccgattccgtgtggtttttgagctgttagttttaacaggacgtgcAACCTCATTTCCCTTCTGTCGCACAAATGATTTTAGCATGATATCGATGAGTGATGACAAATAAGTGTTGTGTTCCTTTGTTCAACGTCCCCTACATTTAAATGTATCACGCCCAAATGCagctgactgtcttctgcaggttgtcctctaaccagtgaagTAAAAATGTTATCCCGTTTCCATGTGTTTTGTTTAGTTGTGTTAGTAAGTAATATGATTATGATTATTGTGGCAGATgtttgtgtatacagtatggcCCATTTTACGTTTAGGTTTTCAATATATCAcaaactgtttctgcatattggttGTTGATTTGTACATGTTAAAATTGTGTGTTGACATTGGGCTATCCCACCTagcaaaatgtaataaaaaaatgcTTTGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1322632 lncRNA upstream 51786 28551842 ~ 28552803 (+) True G1159781
TU1322630 lncRNA upstream 54104 28544546 ~ 28550485 (+) True G1159779
TU1322586 lncRNA upstream 109693 28479024 ~ 28494896 (+) True G1159741
TU1322589 lncRNA upstream 118610 28483846 ~ 28485979 (+) True G1159742
TU1322558 lncRNA upstream 136282 28458999 ~ 28468307 (+) True G1159715
TU1322675 lncRNA downstream 21606 28630299 ~ 28632208 (+) True G1159821
TU1322353 lncRNA downstream 51874 28660567 ~ 28700243 (+) True G1159547
TU1322703 lncRNA downstream 61353 28670046 ~ 28671329 (+) True G1159847
TU1322706 lncRNA downstream 63957 28672650 ~ 28780325 (+) True G1159849
TU1322368 lncRNA downstream 103623 28712316 ~ 28712960 (+) True LOC110487366
XM_021559308.2 mRNA upstream 1019 28595965 ~ 28603570 (+) True LOC110487378
LOC110487355 mRNA upstream 103920 28472333 ~ 28500669 (+) False LOC110487355
XM_021593186.2 mRNA upstream 256053 28338501 ~ 28348536 (+) False LOC110513252
XR_005035513.1 mRNA upstream 267264 28336680 ~ 28337325 (+) True LOC118938258
XM_021559289.2 mRNA upstream 402995 28180784 ~ 28201594 (+) True LOC110487363
XM_036940706.1 mRNA downstream 99002 28707695 ~ 28713789 (+) False LOC110487366
XM_036940703.1 mRNA downstream 108125 28716818 ~ 28721736 (+) True LOC118938259
LOC118938260 mRNA downstream 142819 28751512 ~ 28753479 (+) True LOC118938260
XM_036940704.1 mRNA downstream 159523 28768216 ~ 28774940 (+) True LOC110485131
XM_021557381.2 mRNA downstream 250842 28859535 ~ 28860605 (+) True LOC110486062
TU1322370 other upstream 105383 28472676 ~ 28499206 (+) True LOC110487355
TU1322524 other upstream 346615 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 478951 28119665 ~ 28125638 (+) True G1159631
TU1321052 other upstream 738882 27863508 ~ 27865707 (+) True LOC118938246
TU1322234 other upstream 818424 27780222 ~ 27786165 (+) True G1159435
TU1322806 other downstream 210041 28818734 ~ 28819448 (+) True G1159924
TU1325076 other downstream 690065 29298758 ~ 29299656 (+) True G1161908
TU1325047 other downstream 755359 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325585 other downstream 885669 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 1222061 29830754 ~ 29831296 (+) True G1162753

Expression Profile