RNA id: XM_021557381.2


Basic Information

Item Value
RNA id XM_021557381.2
length 860
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110486062
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28859535 ~ 28860605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCTTTGAGGATGTGTCCATAACATTAGTGCTTACTCCAAGTGAAACTACAAAATGGAGCTGCAGACATGGCTCCTGATGGTCTTTACGTGCTGCTATGCTGTGCCACAAGACATGTCAGGGAAGCAAATCATTTTCCCAGTGAAGTCAAACACCGCCTATGTCAAGATAACCCCTGACATGAACAAAATCTTCTTTGCTGTGACTGTCTGCGTTCGATTTTTCACCGACTACCAGACAAAGGAGCTGACCATTTTCTCATTGGCCACGCCTTCTCATGCTGATGGTTTTGTAATCTTCAGGGGAGATGGGGGAAATTACAGGGTGTACATTGGGGACCAAGGTATCTATTTCTGGGGATTGCCAGACAAAATGAACGAGTGGAACTCTGTTTGTGGGACGTGGGATGCCAGCACAGGATTGACTCAACTGTGGGTGAATGGGAAGCCAAGTGCAAGGAAAGCGCTCCAAGCCGGCAGCTCCATCTCTGGTACTCCCAGTATTATTTTAGGTCAGGACCAAGATGCATACGTTGGTGGGTTTGATGTGTATGACTCCTTTTACGGACATGAGACTGATGTCCACATGTGGGACAGAGTGCTCTCCCCATGTGAGATCCAAAGCTACATGAAGGGGGAGGTGTTATCTCCAGGGAATGTGGTAAACTGGAACGCACTAAAATACACAAGGCATGACTATGTGGTTGTTGAGAGGATGCAGAACCTGACCTGTTAAACATTTGACCTCAAGAATCACAAACAGATCATTTCAAACCATGCTTAGATTTGTATACGATCATGTGTCTGTTATGCGTGGGAATCGtgtggaacagatttccaaaattaaaatcacttggagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1324729 lncRNA upstream 429 28858872 ~ 28859106 (+) True G1161592
TU1324704 lncRNA upstream 17938 28841377 ~ 28841597 (+) True G1161567
TU1324701 lncRNA upstream 19852 28838493 ~ 28839683 (+) True G1161564
TU1322805 lncRNA upstream 22915 28818272 ~ 28836620 (+) True G1159923
TU1322804 lncRNA upstream 45045 28814165 ~ 28814490 (+) True G1159922
TU1324978 lncRNA downstream 304431 29165036 ~ 29165237 (+) True G1161821
TU1324920 lncRNA downstream 312150 29172755 ~ 29173426 (+) True G1161768
TU1324983 lncRNA downstream 316693 29177298 ~ 29177650 (+) False G1161822
TU1324980 lncRNA downstream 316849 29177454 ~ 29177894 (+) True G1161822
TU1324987 lncRNA downstream 318485 29179090 ~ 29179331 (+) True G1161823
XM_036940704.1 mRNA upstream 84595 28768216 ~ 28774940 (+) True LOC110485131
LOC118938260 mRNA upstream 106056 28751512 ~ 28753479 (+) True LOC118938260
XM_036940703.1 mRNA upstream 137799 28716818 ~ 28721736 (+) True LOC118938259
XM_036940706.1 mRNA upstream 145746 28707695 ~ 28713789 (+) False LOC110487366
XM_036940702.1 mRNA upstream 250842 28604589 ~ 28608693 (+) True LOC118938254
XM_021557384.2 mRNA downstream 307796 29168401 ~ 29172521 (+) True rrp36
XM_036940718.1 mRNA downstream 406013 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940719.1 mRNA downstream 406013 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940720.1 mRNA downstream 406013 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940721.1 mRNA downstream 406013 29266618 ~ 29367748 (+) False si:ch211-126j24.1
TU1322806 other upstream 40087 28818734 ~ 28819448 (+) True G1159924
TU1322364 other upstream 160714 28338985 ~ 28698821 (+) True LOC110513252
TU1322370 other upstream 360329 28472676 ~ 28499206 (+) True LOC110487355
TU1322524 other upstream 601561 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 733897 28119665 ~ 28125638 (+) True G1159631
TU1325076 other downstream 438153 29298758 ~ 29299656 (+) True G1161908
TU1325047 other downstream 503447 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325585 other downstream 633757 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 970149 29830754 ~ 29831296 (+) True G1162753
TU1327390 other downstream 2253706 31114311 ~ 31119677 (+) True LOC110486104

Expression Profile